Miyakogusa Predicted Gene

Lj0g3v0085339.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085339.1 tr|Q2HU07|Q2HU07_MEDTR Polynucleotidyl
transferase, Ribonuclease H fold OS=Medicago truncatula
GN=Mt,41.05,5e-19,UBN2_3,NULL; seg,NULL,CUFF.4496.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...    67   7e-12

>AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); Has
           707 Blast hits to 705 proteins in 25 species: Archae -
           0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:7447690-7448403 REVERSE LENGTH=237
          Length = 237

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 2   MVVSWILRSLSPTIYQSQSVIWMDTAFAIWNDLKDRFSQEDMLRVADLQEMISSFKQGEL 61
           MV+ W++ S++  + +S  V++ +TA  +W DL+  F     L++  L+  +++ +QG  
Sbjct: 85  MVMYWLMNSMTDKLLES--VMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGD 142

Query: 62  TVTDYFTQLRTLWDELDIFRPLPACVCAF-KCTCSATSSHAMYKSLRGSVLSLWLYSNNQ 120
           +V +YF +L  +W EL  + P+P C C    C C+  +  A  K  R   L + L  N  
Sbjct: 143 SVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFL-MGLKLNQG 201

Query: 121 KSTTTLQIRFQLCLP 135
               T +I FQ   P
Sbjct: 202 FEAVTTKIMFQKPPP 216