Miyakogusa Predicted Gene

Lj0g3v0085329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085329.1 tr|D7KZK3|D7KZK3_ARALL NC domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,69.84,2e-19,seg,NULL; LRAT,LRAT-like domain; no
description,NULL; NC DOMAIN-CONTAINING PROTEIN,NULL; HRAS-LIKE
S,CUFF.4508.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06370.1 | Symbols:  | NC domain-containing protein-related |...   124   2e-29
AT5G16360.1 | Symbols:  | NC domain-containing protein-related |...    98   9e-22
AT3G02700.1 | Symbols:  | NC domain-containing protein-related |...    97   2e-21
AT5G16330.1 | Symbols:  | NC domain-containing protein-related |...    82   1e-16
AT1G01225.1 | Symbols:  | NC domain-containing protein-related |...    71   2e-13
AT4G00905.1 | Symbols:  | NC domain-containing protein-related |...    67   2e-12

>AT5G06370.1 | Symbols:  | NC domain-containing protein-related |
          chr5:1947299-1948432 REVERSE LENGTH=259
          Length = 259

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHFTRRGQEVGTGTVLDLLL 60
          MGLLSNRI R SLKPGDHIYSWRTAYIYAHHGIY+GDD+VIHFTRRGQEVGTGTVLDL+L
Sbjct: 1  MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTRRGQEVGTGTVLDLIL 60

Query: 61 IS 62
          +S
Sbjct: 61 VS 62


>AT5G16360.1 | Symbols:  | NC domain-containing protein-related |
          chr5:5355236-5356195 REVERSE LENGTH=283
          Length = 283

 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 53/61 (86%), Gaps = 1/61 (1%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHFTRRGQ-EVGTGTVLDLL 59
          MGL S++I+R+ LKPGDHIYSWR AYIY+HHG+Y+GD+KVIHFTR G  E GTGTVLD +
Sbjct: 1  MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60

Query: 60 L 60
          +
Sbjct: 61 I 61


>AT3G02700.1 | Symbols:  | NC domain-containing protein-related |
          chr3:581727-582813 REVERSE LENGTH=252
          Length = 252

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 53/63 (84%), Gaps = 1/63 (1%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHFTR-RGQEVGTGTVLDLL 59
          MG LSN+I+R+ +KPGDHIYSWR AYIYAHHGIY+G+ +V HFTR  GQE GTGT LD +
Sbjct: 1  MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60

Query: 60 LIS 62
          ++S
Sbjct: 61 IVS 63


>AT5G16330.1 | Symbols:  | NC domain-containing protein-related |
          chr5:5346163-5346977 REVERSE LENGTH=242
          Length = 242

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 40/43 (93%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHF 43
          +G +SN+I+R+ LKPGDHIYSWR AYIY+HHGIYIGD+KVIHF
Sbjct: 9  IGFISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHF 51


>AT1G01225.1 | Symbols:  | NC domain-containing protein-related |
          chr1:96064-97242 FORWARD LENGTH=260
          Length = 260

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 36/43 (83%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHF 43
          MGLL+N+I RE LKPGDHIY++R  + Y+HHGI++G  KV+HF
Sbjct: 1  MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHF 43


>AT4G00905.1 | Symbols:  | NC domain-containing protein-related |
          chr4:387865-389060 FORWARD LENGTH=263
          Length = 263

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 36/43 (83%)

Query: 1  MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHF 43
          MG+L+N++ R+ LKPGDHIY++R  + Y+HHG+++G  KV+HF
Sbjct: 1  MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHF 43