Miyakogusa Predicted Gene

Lj0g3v0085239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0085239.1 Non Chatacterized Hit- tr|I1JQ40|I1JQ40_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=3,78.85,4e-17,seg,NULL,CUFF.4488.1
         (64 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52600.1 | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 ...    63   4e-11
AT2G36190.1 | Symbols: AtcwINV4, cwINV4 | cell wall invertase 4 ...    55   1e-08

>AT3G52600.1 | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 |
          chr3:19507080-19509273 REVERSE LENGTH=590
          Length = 590

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 33/42 (78%), Gaps = 2/42 (4%)

Query: 23 NNGVEAFHKIYPHLQSVSAV--SVSGMHRTGYHFQPPRNWIN 62
          NNGV+AFHK++  LQS S    SVS +HRT YHFQPPR+WIN
Sbjct: 20 NNGVDAFHKVFKKLQSKSTSLESVSPLHRTAYHFQPPRHWIN 61


>AT2G36190.1 | Symbols: AtcwINV4, cwINV4 | cell wall invertase 4 |
          chr2:15174951-15177785 REVERSE LENGTH=591
          Length = 591

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 25 GVEAFHKIYPHLQSVSAVSVSGMHRTGYHFQPPRNWIN 62
          G++AFH+IY  LQS S  SV+ +HR  +HFQPP++WIN
Sbjct: 26 GIDAFHQIYEELQSESVESVNHLHRPSFHFQPPKHWIN 63