Miyakogusa Predicted Gene

Lj0g3v0084479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0084479.1 tr|A9TMH9|A9TMH9_PHYPA ATP-binding cassette
transporter, subfamily A, member 6, group ATH protein
Pp,49.51,3e-19,seg,NULL; ABC TRANSPORTER,NULL; ATP-BINDING CASSETTE
TRANSPORTER SUBFAMILY A (ABCA),ABC transporter ,CUFF.4437.1
         (118 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47780.1 | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:1762...    68   1e-12
AT3G47790.1 | Symbols: ATATH7, ATH7 | ABC2 homolog 7 | chr3:1762...    67   2e-12
AT3G47760.1 | Symbols: ATATH4, ATH4, ABCA5 | ABC2 homolog 4 | ch...    64   2e-11
AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette subf...    64   3e-11
AT3G47770.1 | Symbols: ATATH5, ATH5, ABCA6 | ABC2 homolog 5 | ch...    62   1e-10
AT3G47740.1 | Symbols: ATATH2, ATH2, ABCA3 | ABC2 homolog 2 | ch...    60   2e-10
AT5G61700.1 | Symbols: ATATH16, ATH16 | ABC2 homolog 16 | chr5:2...    53   3e-08

>AT3G47780.1 | Symbols: ATATH6, ATH6 | ABC2 homolog 6 |
          chr3:17624500-17628972 FORWARD LENGTH=935
          Length = 935

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 6  PAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDK-PQYK 64
          P PASFST+ANALLRKNLT+QKRN+ +NIR                   D Q +     +
Sbjct: 4  PGPASFSTRANALLRKNLTYQKRNLWSNIRLIMIPFYLCILLVIIQILFDTQVNNSADNR 63

Query: 65 CGCVCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
          CGC C           +LCG ++S  DQ  FC
Sbjct: 64 CGCECIERNRAGKCQRELCGLEHSKPDQAFFC 95


>AT3G47790.1 | Symbols: ATATH7, ATH7 | ABC2 homolog 7 |
          chr3:17629584-17633711 FORWARD LENGTH=901
          Length = 901

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 7  APASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKPQYKCG 66
          +PASF TQA+ALLRKNL FQKRN+ +NIR                   D QF+    +CG
Sbjct: 5  SPASFLTQADALLRKNLVFQKRNIWSNIRLITIPFFLCLLLLVIQMLFDTQFNDVHGQCG 64

Query: 67 CVCPNGKTNCPSSEKLCGAQYSDADQFVFC 96
          C           +EK CG +YS ++Q  FC
Sbjct: 65 C-----------NEKTCGLRYSTSEQAAFC 83


>AT3G47760.1 | Symbols: ATATH4, ATH4, ABCA5 | ABC2 homolog 4 |
          chr3:17611787-17616639 FORWARD LENGTH=872
          Length = 872

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 8  PASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDK-PQYKCG 66
          PA F TQAN+L RKNLT+QKRN+ +N+R                   D Q +     +CG
Sbjct: 6  PAGFFTQANSLFRKNLTYQKRNIWSNVRLIVIPFYLCVLLVGIQVLFDTQVNNSADNRCG 65

Query: 67 CVC--PNGKTNCPSSEKLCGAQYSDADQFVFC 96
          C C   NG   C   +K CG QYS  +Q  FC
Sbjct: 66 CRCIDKNGDGKC--GQKSCGLQYSSQNQAFFC 95


>AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette
          subfamily A4 | chr3:17606427-17610889 FORWARD
          LENGTH=947
          Length = 947

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 8  PASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDK-PQYKCG 66
          PASF T+ANAL RKNLT+QKRN+ +N+R                   D Q +     +CG
Sbjct: 6  PASFLTRANALFRKNLTYQKRNIWSNVRLIVIPFYLCVLLVGIQVLFDTQVNNSADNRCG 65

Query: 67 CVC--PNGKTNCPSSEKLCGAQYSDADQFVFC 96
          C C   NG   C    K CG QYS   Q  FC
Sbjct: 66 CRCIHKNGDGKC--ERKSCGLQYSSLTQASFC 95


>AT3G47770.1 | Symbols: ATATH5, ATH5, ABCA6 | ABC2 homolog 5 |
          chr3:17618055-17622678 FORWARD LENGTH=900
          Length = 900

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 6  PAPASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKP-QYK 64
          P  ASF TQANAL +KNLT+QKRN+ +N+R                   D   +     +
Sbjct: 4  PVAASFLTQANALFKKNLTYQKRNIWSNVRLIVIPLYLCVVLVCIQAVFDSLVNNSVDNQ 63

Query: 65 CGCVCP----NGKTNCPSSEKLCGAQYSDADQFVFC 96
          CGC C     NG   C    K CG QYS  +Q VFC
Sbjct: 64 CGCRCADDDKNGDGKC--EIKSCGLQYSSQNQAVFC 97


>AT3G47740.1 | Symbols: ATATH2, ATH2, ABCA3 | ABC2 homolog 2 |
          chr3:17600651-17604965 FORWARD LENGTH=932
          Length = 932

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 7  APASFSTQANALLRKNLTFQKRNVKTNIRXXXXXXXXXXXXXXXXXXXDRQFDKP-QYKC 65
           PASF T+ANA+LRKNLT+QKRN+ +N+R                   D Q +     +C
Sbjct: 5  GPASFWTRANAILRKNLTYQKRNIWSNVRLIMIPFYLCIVLVFIQALFDSQVNNSLDNQC 64

Query: 66 GCVCPN--GKTNCPSSEKLCGAQYSDADQFVFC 96
          GC C +  G   C   +  CG +YS  DQ  FC
Sbjct: 65 GCQCIDKLGDGKC---QMTCGLEYSTRDQGFFC 94


>AT5G61700.1 | Symbols: ATATH16, ATH16 | ABC2 homolog 16 |
          chr5:24793864-24797944 FORWARD LENGTH=888
          Length = 888

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/35 (68%), Positives = 31/35 (88%), Gaps = 2/35 (5%)

Query: 1  MVNPPPAPASFSTQANALLRKNLTFQKRNVKTNIR 35
          MVNP  +PASF TQANALLRKNLT+Q++++ TN+R
Sbjct: 1  MVNP--SPASFWTQANALLRKNLTYQRKHIWTNVR 33