Miyakogusa Predicted Gene

Lj0g3v0084329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0084329.1 tr|G7I946|G7I946_MEDTR ATP-dependent DNA helicase
recG OS=Medicago truncatula GN=MTR_1g031120 PE=4 S,80.09,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; no
description,NULL; Helicase_C,Helicase,,CUFF.4421.1
         (410 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01440.1 | Symbols:  | DEAD/DEAH box RNA helicase family prot...   568   e-162
AT3G02060.1 | Symbols:  | DEAD/DEAH box helicase, putative | chr...   159   3e-39
AT3G02060.2 | Symbols:  | DEAD/DEAH box helicase, putative | chr...   159   3e-39
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA...    59   5e-09
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ...    55   1e-07

>AT2G01440.1 | Symbols:  | DEAD/DEAH box RNA helicase family protein
            | chr2:193950-199056 REVERSE LENGTH=973
          Length = 973

 Score =  568 bits (1465), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/410 (68%), Positives = 333/410 (81%)

Query: 1   MEVLGSGYQAAFMVPTELLAIQXXXXXXXXXXXXDEVEFKPTVALLTGSTPLKQSRIIRK 60
           MEV+GSGYQAAFM PTELLAIQ            + V  KPT+ LLTGSTP KQSR+IR+
Sbjct: 564 MEVIGSGYQAAFMAPTELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQSRMIRQ 623

Query: 61  GIQTGEISMVIGTHSLIAESVEFLALRIAVVDEQHRFGVIQRGRFNSKLFCTSSISSVED 120
            +Q+G IS +IGTHSLIAE +E+ ALRIAVVDEQ RFGVIQRG+FNSKL+ TS IS    
Sbjct: 624 DLQSGAISFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGS 683

Query: 121 AVTDRPSRNDAYMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVQTYTIEGN 180
           + +D  S+ D  MAPHVLAMSATPIPR+LALALYGD+SLTQIT +P GRIPV+T+  EGN
Sbjct: 684 SDSDDTSKADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGN 743

Query: 181 DKGFEDVYKMMMNELEDGGKVYLVYPIIELSEQLPQLRAASADFEAMSNRFHGYNCGLLH 240
           + G ++VY MM+ +L+ GG+VY+VYP+I+ SEQLPQLRAASA+ E ++ +F  YNCGLLH
Sbjct: 744 ETGIKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLH 803

Query: 241 GKMKSDEKEETLKKFRTGEMHILLATQVIEIGVDVPDASMMVVLNSERFGIAQLHQLRGR 300
           G+MKSD+KEE L KFR+GE  ILL+TQVIEIGVDVPDASMMVV+N+ERFGIAQLHQLRGR
Sbjct: 804 GRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGR 863

Query: 301 VGRGTRQSKCILVASTASSLNRLKVLEQSSDGFHLANMXXXXXXXXXXXXKKQSGHLPEF 360
           VGRGTR+SKC+LV S+ +SL RL +L +SSDGF+LAN+            KKQSGHLPEF
Sbjct: 864 VGRGTRKSKCLLVGSSTNSLKRLNMLGKSSDGFYLANIDLLLRGPGDLLGKKQSGHLPEF 923

Query: 361 PITRLEVDGNILQEAHVAALKILSASHDLERFPALKRELSMRQPLCLLGD 410
           P+ RLE+DGN+LQEAH+AAL +L  SHDLE+FPALK ELSMRQPLCLLGD
Sbjct: 924 PVARLEIDGNMLQEAHIAALNVLGDSHDLEKFPALKAELSMRQPLCLLGD 973


>AT3G02060.1 | Symbols:  | DEAD/DEAH box helicase, putative |
           chr3:354409-358319 FORWARD LENGTH=823
          Length = 823

 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 177/342 (51%), Gaps = 47/342 (13%)

Query: 3   VLGSGYQAAFMVPTELLAIQXXXXXXXXXXXXDEVEFKPTVALLTGSTPLKQSRIIRKGI 62
           V+ +G QA  + PT +LA Q              ++    V LL+      +     + I
Sbjct: 315 VVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIK----VGLLSRFQTKAEKEEYLEMI 370

Query: 63  QTGEISMVIGTHSLIAESVEFLALRIAVVDEQHRFGVIQRGRFNSKLFCTSSISSVEDAV 122
           +TG +++++GTHSL+   V +  L + VVDE+ RFGV Q+ +  S  F TS         
Sbjct: 371 KTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIAS--FKTSV-------- 420

Query: 123 TDRPSRNDAYMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVQTYTIEGNDK 182
                         VL +SATPIPRTL LAL G    + I+  PP RIP++T+       
Sbjct: 421 -------------DVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRK- 466

Query: 183 GFEDVYKMMMNELEDGGKVYLVYPIIELSEQLPQLRAASADFEAMSNRFHGYNCGLLHGK 242
             E V + + NEL+ GG+V+ V P I+  E++        DF  +   F   +  + HGK
Sbjct: 467 --EKVIEAIKNELDRGGQVFYVLPRIKGLEEV-------MDF--LEEAFPDIDIAMAHGK 515

Query: 243 MKSDEKEETLKKFRTGEMHILLATQVIEIGVDVPDASMMVVLNSERFGIAQLHQLRGRVG 302
             S + EET+++F  G++ IL+ T ++E G+D+ +A+ +++ + ++FG+AQL+QLRGRVG
Sbjct: 516 QYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVG 575

Query: 303 RGTRQSKCILVASTAS-----SLNRLKVLEQSSD---GFHLA 336
           R  +++   L     S     +L RL  LE+  +   GF LA
Sbjct: 576 RADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLA 617


>AT3G02060.2 | Symbols:  | DEAD/DEAH box helicase, putative |
           chr3:354412-358319 FORWARD LENGTH=822
          Length = 822

 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 177/342 (51%), Gaps = 47/342 (13%)

Query: 3   VLGSGYQAAFMVPTELLAIQXXXXXXXXXXXXDEVEFKPTVALLTGSTPLKQSRIIRKGI 62
           V+ +G QA  + PT +LA Q              ++    V LL+      +     + I
Sbjct: 314 VVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIK----VGLLSRFQTKAEKEEYLEMI 369

Query: 63  QTGEISMVIGTHSLIAESVEFLALRIAVVDEQHRFGVIQRGRFNSKLFCTSSISSVEDAV 122
           +TG +++++GTHSL+   V +  L + VVDE+ RFGV Q+ +  S  F TS         
Sbjct: 370 KTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIAS--FKTSV-------- 419

Query: 123 TDRPSRNDAYMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVQTYTIEGNDK 182
                         VL +SATPIPRTL LAL G    + I+  PP RIP++T+       
Sbjct: 420 -------------DVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRK- 465

Query: 183 GFEDVYKMMMNELEDGGKVYLVYPIIELSEQLPQLRAASADFEAMSNRFHGYNCGLLHGK 242
             E V + + NEL+ GG+V+ V P I+  E++        DF  +   F   +  + HGK
Sbjct: 466 --EKVIEAIKNELDRGGQVFYVLPRIKGLEEV-------MDF--LEEAFPDIDIAMAHGK 514

Query: 243 MKSDEKEETLKKFRTGEMHILLATQVIEIGVDVPDASMMVVLNSERFGIAQLHQLRGRVG 302
             S + EET+++F  G++ IL+ T ++E G+D+ +A+ +++ + ++FG+AQL+QLRGRVG
Sbjct: 515 QYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVG 574

Query: 303 RGTRQSKCILVASTAS-----SLNRLKVLEQSSD---GFHLA 336
           R  +++   L     S     +L RL  LE+  +   GF LA
Sbjct: 575 RADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLA 616


>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
           helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
          Length = 616

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 29/202 (14%)

Query: 131 AYMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVQTYTIEGNDKGFEDVYKM 190
           A M   + +++   +   L + L GD S  ++ D       + TY+I  +  G   +   
Sbjct: 289 ATMPSWIRSLTKKYLNNPLTVDLVGD-SDQKLAD------GITTYSIIADSYGRASIIGP 341

Query: 191 MMNELEDGGKVYLVYPIIELSEQLPQLRAASADFEAMSNRFHGYNCGLLHGKMKSDEKEE 250
           ++ E   GGK  +       +++L    A S            + C  LHG +   ++E 
Sbjct: 342 LVTEHAKGGKCIVFTQTKRDADRLSYALARS------------FKCEALHGDISQSQRER 389

Query: 251 TLKKFRTGEMHILLATQVIEIGVDVPDASMMVVL----NSERFGIAQLHQLRGRVGRGTR 306
           TL  FR G  +IL+AT V   G+DVP+  +++      N+E F    +H+  GR GR  +
Sbjct: 390 TLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETF----VHRT-GRTGRAGK 444

Query: 307 QSKCILVASTASSLNRLKVLEQ 328
           +   IL+ S   S   +K++E+
Sbjct: 445 KGSAILIYSQDQS-RAVKIIER 465


>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
           helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
          Length = 610

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 21/146 (14%)

Query: 172 VQTYTIEGNDKGFEDVYKMMMNELEDGGKVYLVYPIIELSEQLPQLRAASADFEAMSNRF 231
           +  Y+I  +  G   +   ++ E   GGK  +       +++L    A S          
Sbjct: 335 ITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKS---------- 384

Query: 232 HGYNCGLLHGKMKSDEKEETLKKFRTGEMHILLATQVIEIGVDVPDASMMVVL----NSE 287
             Y C  LHG +   ++E TL  FR G   IL+AT V   G+DVP+  +++      N+E
Sbjct: 385 --YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTE 442

Query: 288 RFGIAQLHQLRGRVGRGTRQSKCILV 313
            F    +H+  GR GR  ++   IL+
Sbjct: 443 TF----VHRT-GRTGRAGKKGSAILI 463