Miyakogusa Predicted Gene

Lj0g3v0083899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083899.1 tr|A9TB49|A9TB49_PHYPA Histone transcription
regulator HIRA OS=Physcomitrella patens subsp. patens
G,51.14,0.000000000000003, ,CUFF.4400.1
         (88 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44530.1 | Symbols: HIRA | homolog of histone chaperone HIRA ...   101   9e-23
AT3G44530.2 | Symbols: HIRA | homolog of histone chaperone HIRA ...   101   1e-22

>AT3G44530.1 | Symbols: HIRA | homolog of histone chaperone HIRA |
           chr3:16116026-16121247 FORWARD LENGTH=1058
          Length = 1058

 Score =  101 bits (252), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 2/73 (2%)

Query: 12  VKFNHSMFRRNISNAQEVKSVQLGGPIGTSKTGRKELQPYNIIAIGSQDRTITLWTTSSP 71
           V+FNHSMF+R  S+  E K  Q+G   GTSK+G K+LQ YN+IA+GSQDRTIT+WTT S 
Sbjct: 267 VRFNHSMFKRIPSSTHETK--QVGWSNGTSKSGEKDLQSYNVIAMGSQDRTITVWTTGSA 324

Query: 72  RPLFVAKHFFTQA 84
           RPLFVAKHFF Q+
Sbjct: 325 RPLFVAKHFFGQS 337


>AT3G44530.2 | Symbols: HIRA | homolog of histone chaperone HIRA |
           chr3:16116026-16121247 FORWARD LENGTH=1040
          Length = 1040

 Score =  101 bits (252), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 2/73 (2%)

Query: 12  VKFNHSMFRRNISNAQEVKSVQLGGPIGTSKTGRKELQPYNIIAIGSQDRTITLWTTSSP 71
           V+FNHSMF+R  S+  E K  Q+G   GTSK+G K+LQ YN+IA+GSQDRTIT+WTT S 
Sbjct: 267 VRFNHSMFKRIPSSTHETK--QVGWSNGTSKSGEKDLQSYNVIAMGSQDRTITVWTTGSA 324

Query: 72  RPLFVAKHFFTQA 84
           RPLFVAKHFF Q+
Sbjct: 325 RPLFVAKHFFGQS 337