Miyakogusa Predicted Gene
- Lj0g3v0083479.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0083479.2 Non Chatacterized Hit- tr|I1N107|I1N107_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53828 PE,51.67,3e-19,
,CUFF.4371.2
(111 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06660.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 70 3e-13
AT2G30820.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 62 9e-11
AT2G30820.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 62 9e-11
>AT1G06660.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins
in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13;
Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes
- 12 (source: NCBI BLink). | chr1:2037461-2040148
REVERSE LENGTH=481
Length = 481
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 24 TETERKNKSVRFECVSSDDGDVKKIKSPNNQSACKP-----------SPYPTPLKLFDEM 72
T T KNKSVRFEC D S N S+ KP SP PTPLKL DEM
Sbjct: 214 TFTAGKNKSVRFEC---DLDQSNSSNSSENGSSRKPEMGGKICFTVSSPNPTPLKLSDEM 270
Query: 73 QTPGTVYPASLEKSRDCKHRVRSQFVYSNDNPSENVFL 110
QTPGT+YPA++E + R+RSQFV+S N EN L
Sbjct: 271 QTPGTIYPANMESGGRGRPRIRSQFVHSVSNIMENASL 308
>AT2G30820.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G06660.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:13129800-13132391 FORWARD LENGTH=421
Length = 421
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 24 TETERKNKSVRFECVSSDDGDVKKIKSPNNQSACKP-----------SPYPTPLKLFDEM 72
T K KSVR E D G S N++A KP SPY T +KL DE+
Sbjct: 173 TGVREKTKSVRSEI---DFGQSYSSSSSKNRTASKPEMVGKTSISATSPYTTSMKLSDEI 229
Query: 73 QTPGTVYPASLEKSRDCKHRVRSQFVYSNDNPSENVFL 110
QTPGT++PA++E + + R+RSQFV+S N N L
Sbjct: 230 QTPGTIFPANMESAGRERRRIRSQFVHSASNLIVNASL 267
>AT2G30820.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G06660.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:13129800-13132391 FORWARD LENGTH=421
Length = 421
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 24 TETERKNKSVRFECVSSDDGDVKKIKSPNNQSACKP-----------SPYPTPLKLFDEM 72
T K KSVR E D G S N++A KP SPY T +KL DE+
Sbjct: 173 TGVREKTKSVRSEI---DFGQSYSSSSSKNRTASKPEMVGKTSISATSPYTTSMKLSDEI 229
Query: 73 QTPGTVYPASLEKSRDCKHRVRSQFVYSNDNPSENVFL 110
QTPGT++PA++E + + R+RSQFV+S N N L
Sbjct: 230 QTPGTIFPANMESAGRERRRIRSQFVHSASNLIVNASL 267