Miyakogusa Predicted Gene
- Lj0g3v0083479.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0083479.1 Non Chatacterized Hit- tr|D7KG54|D7KG54_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,38.32,0.000000000000002,seg,NULL;
PROKAR_LIPOPROTEIN,NULL,CUFF.4371.1
(155 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06660.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 72 1e-13
AT2G30820.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 55 2e-08
AT2G30820.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 55 2e-08
>AT1G06660.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins
in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13;
Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes
- 12 (source: NCBI BLink). | chr1:2037461-2040148
REVERSE LENGTH=481
Length = 481
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 16/120 (13%)
Query: 1 MKRSL----RFLLRLLIQSFSAIMGCFFACFRIREV-----LPTISARSNSTDVLISRNR 51
M R+L R +LR + S M CF CFR R+ L + S+ +NS S+N
Sbjct: 6 MNRNLSPLCRSVLRFIDLSVCRAMACFLDCFRARDNRSTSNLVSHSSLANSRKAQDSQND 65
Query: 52 LTSLS-SKERG------DSARNGVGSQRDDIGLKDEAKFLKACGALPGTPVEIRKASEKL 104
L++L S+E+ D R + S D GL+DEA+FLKACG +P TP+EIRKAS+KL
Sbjct: 66 LSALFLSEEKSASSPCLDKERFDLDSIHIDKGLRDEARFLKACGTIPETPIEIRKASQKL 125
>AT2G30820.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G06660.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:13129800-13132391 FORWARD LENGTH=421
Length = 421
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 20 MGCFFACFRIREVLPTISARSNSTDV--LISRNRLTSL-----SSKERGDSARNGVGSQR 72
MGC F CFR ++ T + S + S+NRL++L SS D + + S
Sbjct: 1 MGCLFGCFRAKDDESTTDSVSQAKHNRGHESKNRLSALFLSEASSPCHDDREGSSLNSMH 60
Query: 73 DDIGLKDEAKFLKACGALPGTPVEIRKASEKLKV 106
D LKD+A+FLK +P TP+E+R S+KL+
Sbjct: 61 IDKDLKDDAQFLKVSCEIPATPIEVRNTSKKLET 94
>AT2G30820.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G06660.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:13129800-13132391 FORWARD LENGTH=421
Length = 421
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 20 MGCFFACFRIREVLPTISARSNSTDV--LISRNRLTSL-----SSKERGDSARNGVGSQR 72
MGC F CFR ++ T + S + S+NRL++L SS D + + S
Sbjct: 1 MGCLFGCFRAKDDESTTDSVSQAKHNRGHESKNRLSALFLSEASSPCHDDREGSSLNSMH 60
Query: 73 DDIGLKDEAKFLKACGALPGTPVEIRKASEKLKV 106
D LKD+A+FLK +P TP+E+R S+KL+
Sbjct: 61 IDKDLKDDAQFLKVSCEIPATPIEVRNTSKKLET 94