Miyakogusa Predicted Gene

Lj0g3v0083449.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083449.1 Non Chatacterized Hit- tr|F6H7M7|F6H7M7_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,45.76,6e-18,
,CUFF.4366.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21780.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    61   4e-10

>AT4G21780.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:11567213-11567560 FORWARD LENGTH=115
          Length = 115

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 11/108 (10%)

Query: 88  PVEIGTRGTVASLIMQEIEYFSRIE-LNSQDRPQRNKS---KITDVGSSISTTSRCTIAS 143
           P+ IGTRGT+ SL+ +EI+YF      + Q  P+R  S   K T      S++   +  S
Sbjct: 4   PIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWFS 63

Query: 144 TAENTKKKR----GSSKLLPSMCSMVDVSDQGRPNGTSSFSYRNLRSD 187
             +  KKKR    G  K  PSMCS V+VS + R  G   F+YR L+SD
Sbjct: 64  KTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENRVPG---FNYRILKSD 108