Miyakogusa Predicted Gene

Lj0g3v0083439.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0083439.2 tr|A8J3F4|A8J3F4_CHLRE Predicted protein
(Fragment) OS=Chlamydomonas reinhardtii
GN=CHLREDRAFT_14911,43.97,5e-18,DUF1395,Protein of unknown function
DUF1395,CUFF.4369.2
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60660.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   266   7e-72

>AT3G60660.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF1395
           (InterPro:IPR009829); Has 131 Blast hits to 131 proteins
           in 44 species: Archae - 0; Bacteria - 0; Metazoa - 83;
           Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
           3 (source: NCBI BLink). | chr3:22421481-22423167 FORWARD
           LENGTH=272
          Length = 272

 Score =  266 bits (679), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 126/183 (68%), Positives = 147/183 (80%), Gaps = 2/183 (1%)

Query: 1   MSLHVPYQMPDKMAISNLETSRCLFPEFSGQVS--GSFEALKLDEEPAALPKEKKGRGAP 58
           MS++ P   PDK  + N + +RCL  E + Q     +  +LK DEE A LPKEKKGRG+P
Sbjct: 90  MSIYAPSHFPDKATMLNSDLNRCLLQENAKQYEQHSTLSSLKFDEEAAVLPKEKKGRGSP 149

Query: 59  PMWYVTGSELDSLSSYMRGRLTLEKVNAAITDMASYAEANAQLITAPKKKLAENLWEKAL 118
           P+WY+T  EL+SLSSYMRGRLTLEKVNAAI DMASYAEANA LI A K+KLAENLWEKAL
Sbjct: 150 PLWYITVEELNSLSSYMRGRLTLEKVNAAINDMASYAEANAHLIAASKQKLAENLWEKAL 209

Query: 119 EIRDIAGMEGIKGKHFFLEVDIKGPSLKLDNTGKAILTVLRHLGRINETRVGHHRVIILQ 178
           ++RDI   + +KGKHFFLE D+KGPSLKLDNTGKAILTVLRHLGRI+ETR+G +RVIIL 
Sbjct: 210 KLRDIVTEQAVKGKHFFLETDMKGPSLKLDNTGKAILTVLRHLGRISETRIGQNRVIILM 269

Query: 179 KPH 181
           KPH
Sbjct: 270 KPH 272