Miyakogusa Predicted Gene

Lj0g3v0082899.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0082899.2 tr|Q29FG9|Q29FG9_DROPS GA19946 OS=Drosophila
pseudoobscura pseudoobscura GN=GA19946 PE=4 SV=2,31,9e-19,CELL
DIVISION CYCLE 5-LIKE PROTEIN,NULL; MYB-LIKE DNA-BINDING PROTEIN
MYB,NULL; HTH_MYB,Myb domain; ,CUFF.4334.2
         (347 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09770.1 | Symbols: ATCDC5, CDC5, ATMYBCDC5 | cell division c...   180   2e-45

>AT1G09770.1 | Symbols: ATCDC5, CDC5, ATMYBCDC5 | cell division
           cycle 5 | chr1:3162002-3165122 FORWARD LENGTH=844
          Length = 844

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 135/190 (71%), Gaps = 2/190 (1%)

Query: 35  IKKADRLIKEEARYLCIAMGHGSEPLDEFIEAHNTCLNDLMYFPTREAYGLSSVAGNMEK 94
           +++AD++IKEE ++LC++MGH ++ LD+F+EAHNTC+NDLMYFPTR AY LSSVAGN +K
Sbjct: 630 LQEADKMIKEEGKFLCVSMGHENKTLDDFVEAHNTCVNDLMYFPTRSAYELSSVAGNADK 689

Query: 95  VTSLQHEFESVRNKLEDGKVKIARLEKKVIVLTQGYEVRAKQSLGPQIEATFRQMDVAAT 154
           V + Q E E+VR K+E+ + K   ++ K    T+G+E RA +++  QIEAT +Q ++  T
Sbjct: 690 VAAFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRA-ETVWTQIEATLKQAEIGGT 748

Query: 155 EIECFIALQKQEQLAASHRINNLRDEVXXXXXXXXXXXXXYVSLIEELEKKQAMMEQYRA 214
           E+ECF AL++QE++AAS R  NL++EV             Y +++  +EK + +M  +RA
Sbjct: 749 EVECFKALKRQEEMAASFRKKNLQEEVIKQKETESKLQTRYGNMLAMVEKAEEIMVGFRA 808

Query: 215 LA-QQQEEIE 223
            A ++QE++E
Sbjct: 809 QALKKQEDVE 818



 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 45/52 (86%)

Query: 1  MKYGKNQWARISSLLVRKSAKQCKARWHEWLDPSIKKADRLIKEEARYLCIA 52
          MKYGKNQWARISSLLVRKSAKQCKARW+EWLDPSIKK +   +E+ + L +A
Sbjct: 23 MKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLA 74