Miyakogusa Predicted Gene

Lj0g3v0082389.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0082389.1 Non Chatacterized Hit- tr|Q00YQ0|Q00YQ0_OSTTA
Uncharacterized protein (Fragment) OS=Ostreococcus tau,32.02,6e-18,no
description,Ribosomal protein L25, beta domain; Ribosomal protein
L25-like,Ribosomal protein L25/,CUFF.4296.1
         (195 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66860.1 | Symbols:  | Ribosomal protein L25/Gln-tRNA synthet...   266   8e-72
AT4G23620.1 | Symbols:  | Ribosomal protein L25/Gln-tRNA synthet...   151   3e-37
AT4G23620.2 | Symbols:  | Ribosomal protein L25/Gln-tRNA synthet...   145   1e-35

>AT5G66860.1 | Symbols:  | Ribosomal protein L25/Gln-tRNA
           synthetase, anti-codon-binding domain |
           chr5:26701233-26702531 REVERSE LENGTH=249
          Length = 249

 Score =  266 bits (679), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 151/184 (82%)

Query: 3   GRIPAVVFLQDLLSKDAGNRSAAKKHLLTVEKKQIKAILNSVQTSFFCSTRFPLQIRAGS 62
           GRIPAVVF Q LL  DA  R  ++K LLT +KKQIK+I++SV   FFCST F LQIRAG 
Sbjct: 56  GRIPAVVFPQSLLDTDASKRGVSRKQLLTADKKQIKSIIDSVGLPFFCSTTFQLQIRAGQ 115

Query: 63  GSSHLVESGTVLPVKIHMDQESGQILNLVFVWAEEGMNLKVDVPVVFKGEDVCPGLQKGG 122
           GSS LVESG VLP+K+H D+E+G+ILNLVFVWA++G  LKVDVPVVFKG D CPGLQKGG
Sbjct: 116 GSSTLVESGRVLPLKVHRDEETGKILNLVFVWADDGEKLKVDVPVVFKGLDHCPGLQKGG 175

Query: 123 FLNKIRTSLKFLCPSEHIPSKIEVDVSNLDIEDRIFMRDIEVHPSLKLLSKNENMPICKV 182
            L  IR++LK L P+EHIPSKIEVDVSNLDIED++ ++D+  HPSLKLLSKNE MP+CK+
Sbjct: 176 NLRTIRSTLKLLGPAEHIPSKIEVDVSNLDIEDKVLLQDVVFHPSLKLLSKNETMPVCKI 235

Query: 183 VPTS 186
           V TS
Sbjct: 236 VATS 239


>AT4G23620.1 | Symbols:  | Ribosomal protein L25/Gln-tRNA
           synthetase, anti-codon-binding domain |
           chr4:12315016-12316659 REVERSE LENGTH=264
          Length = 264

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 117/181 (64%), Gaps = 7/181 (3%)

Query: 3   GRIPAVVFLQDLLSKDAGNRSAAKKHLLTVEKKQIKAILNSVQTSFFCSTRFPLQIRAGS 62
           GR+P+++F Q+        +    K L++V+  QI+ ++N +  SFF S  F +++RA  
Sbjct: 74  GRVPSIIFEQE------DGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAEI 127

Query: 63  GSSHLVESGTVLPVKIHMDQESGQILNLVFVWAEEGMNLKVDVPVVFKGEDVCPGLQKGG 122
           GS  ++E    LP  IH+   +   LN+ F+ A  G  LKVD+P+VF G+DV PGL+KG 
Sbjct: 128 GSDEVIEKVRALPRAIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSPGLKKGA 187

Query: 123 FLNKIRTSLKFLCPSEHIPSKIEVDVSNLDIEDRIFMRDIEVHPSLKLLSKNENMPICKV 182
            LN I+ ++KFLCP+E IP  IEVD+S LDI  ++ M D++VHP+LKL+ K+++ PI KV
Sbjct: 188 SLNTIKRTVKFLCPAEIIPPYIEVDLSQLDIGQKLVMGDLKVHPALKLI-KSKDEPIVKV 246

Query: 183 V 183
            
Sbjct: 247 A 247


>AT4G23620.2 | Symbols:  | Ribosomal protein L25/Gln-tRNA
           synthetase, anti-codon-binding domain |
           chr4:12315016-12316659 REVERSE LENGTH=277
          Length = 277

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 119/194 (61%), Gaps = 20/194 (10%)

Query: 3   GRIPAVVFLQDLLSKDAGNRSAAKKHLLTVEKKQIKAILNSVQTSFFCSTRFPLQIRAGS 62
           GR+P+++F Q+        +    K L++V+  QI+ ++N +  SFF S  F +++RA  
Sbjct: 74  GRVPSIIFEQE------DGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAEI 127

Query: 63  GSSHLVESGTVLP-------------VKIHMDQESGQILNLVFVWAEEGMNLKVDVPVVF 109
           GS  ++E    LP             +KIH+   +   LN+ F+ A  G  LKVD+P+VF
Sbjct: 128 GSDEVIEKVRALPRAVKSPFLSLMKLIKIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVF 187

Query: 110 KGEDVCPGLQKGGFLNKIRTSLKFLCPSEHIPSKIEVDVSNLDIEDRIFMRDIEVHPSLK 169
            G+DV PGL+KG  LN I+ ++KFLCP+E IP  IEVD+S LDI  ++ M D++VHP+LK
Sbjct: 188 IGDDVSPGLKKGASLNTIKRTVKFLCPAEIIPPYIEVDLSQLDIGQKLVMGDLKVHPALK 247

Query: 170 LLSKNENMPICKVV 183
           L+ K+++ PI KV 
Sbjct: 248 LI-KSKDEPIVKVA 260