Miyakogusa Predicted Gene

Lj0g3v0082129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0082129.1 tr|B9S9Q8|B9S9Q8_RICCO Pectinesterase OS=Ricinus
communis GN=RCOM_0521220 PE=3
SV=1,61.64,1e-18,Pectinesterase,Pectinesterase, catalytic; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no descri,CUFF.4285.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55590.1 | Symbols: QRT1 | Pectin lyase-like superfamily prot...    86   7e-18
AT5G47500.1 | Symbols:  | Pectin lyase-like superfamily protein ...    59   8e-10

>AT5G55590.1 | Symbols: QRT1 | Pectin lyase-like superfamily protein
           | chr5:22519911-22521699 FORWARD LENGTH=380
          Length = 380

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query: 6   FFICNLCREKVLVTKTKPYVSFIGKRNQTASVVITWNSKSSDKGPNGIALGTYGSATVAV 65
           F +  + REKV+V K+KPY+SFIG  +     VI+W+ K+SD G +G  LGTY +A+V++
Sbjct: 113 FILPGIYREKVIVPKSKPYISFIGNESYAGDTVISWSDKASDLGCDGKELGTYRTASVSI 172

Query: 66  ESDYFCATEITFE 78
           ESD+FCAT ITFE
Sbjct: 173 ESDFFCATAITFE 185


>AT5G47500.1 | Symbols:  | Pectin lyase-like superfamily protein |
           chr5:19271262-19272845 REVERSE LENGTH=362
          Length = 362

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 4/66 (6%)

Query: 13  REKVLVTKTKPYVSFIGK-RNQTASVVITWNSKSSDKGPNGIALGTYGSATVAVESDYFC 71
           REKV+V  TKPY++F G  R+ TA   I W+ ++SD G NG  L TY +A+V V ++YF 
Sbjct: 99  REKVVVPATKPYITFKGAGRDVTA---IEWHDRASDLGANGQQLRTYQTASVTVYANYFT 155

Query: 72  ATEITF 77
           A  I+F
Sbjct: 156 ARNISF 161