Miyakogusa Predicted Gene
- Lj0g3v0081919.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0081919.1 Non Chatacterized Hit- tr|B9STU6|B9STU6_RICCO
Mom(Plant), putative OS=Ricinus communis
GN=RCOM_05439,47.92,0.00000000000001,seg,NULL; SNF2_N,SNF2-related;
P-loop containing nucleoside triphosphate hydrolases,NULL; SUBFAMILY
,gene.g6069.t1.1
(712 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08060.2 | Symbols: MOM, MOM1 | ATP-dependent helicase family... 177 2e-44
AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family... 177 2e-44
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 88 2e-17
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 81 2e-15
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 73 8e-13
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 72 1e-12
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 72 1e-12
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 71 2e-12
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 70 7e-12
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 70 7e-12
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 70 7e-12
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 69 9e-12
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 69 9e-12
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 66 8e-11
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 66 9e-11
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 66 9e-11
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 65 2e-10
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 65 2e-10
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 62 1e-09
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 61 3e-09
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 59 1e-08
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 59 1e-08
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 59 2e-08
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 59 2e-08
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 58 3e-08
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 56 8e-08
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 54 4e-07
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 53 6e-07
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 52 1e-06
>AT1G08060.2 | Symbols: MOM, MOM1 | ATP-dependent helicase family
protein | chr1:2501981-2510488 REVERSE LENGTH=2001
Length = 2001
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 159/291 (54%), Gaps = 12/291 (4%)
Query: 301 IGNILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKL 360
+GNIL+D + QRFG Y+ G SKK +A++ FN KES V L+E R C ++KL
Sbjct: 593 LGNILEDFVGQRFGPK---SYEHGIYSSKKNSAINNFN-KESQCCVLLLETRACSQTIKL 648
Query: 361 SSVDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLT 420
D ILF S +P +D++ ++K+ + S + +FRLYS TVEEK L+LA++ R
Sbjct: 649 LRADAFILFGSSLNPSHDVKHVEKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQ- 707
Query: 421 VDNNMQLINQSICHALLKWGASYLFDKLDYLHGGEFSVSAPDICSDQSLLSDIICELSPN 480
+ ++ +N+S+ HALL WGASYLFDKLD+ H E S + +QS++ +I E S
Sbjct: 708 -NKAVENLNRSLTHALLMWGASYLFDKLDHFHSSETPDSG--VSFEQSIMDGVIHEFSSI 764
Query: 481 LVYGGGEPGDNTDCNGWSFISRVQKNGGEYARNILLLGEREIKKLGNEPHTSSWSDLLKA 540
L GGE + C + + G Y+ + L GE IK E WS LL
Sbjct: 765 LSSKGGEENEVKLC----LLLEAKHAQGTYSSDSTLFGEDHIKLSDEESPNIFWSKLLGG 820
Query: 541 RRPQWKLLSVSSQRIRKTVKHFDRIIKESECENDAVVRKRRKVSIDYVDPK 591
+ P WK S + QR RK V++F+ + + +KR+K S D DP+
Sbjct: 821 KNPMWKYPSDTPQRNRKRVQYFEGSEASPKTGDGGNAKKRKKASDDVTDPR 871
>AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family
protein | chr1:2501981-2510488 REVERSE LENGTH=2001
Length = 2001
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 159/291 (54%), Gaps = 12/291 (4%)
Query: 301 IGNILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKL 360
+GNIL+D + QRFG Y+ G SKK +A++ FN KES V L+E R C ++KL
Sbjct: 593 LGNILEDFVGQRFGPK---SYEHGIYSSKKNSAINNFN-KESQCCVLLLETRACSQTIKL 648
Query: 361 SSVDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLT 420
D ILF S +P +D++ ++K+ + S + +FRLYS TVEEK L+LA++ R
Sbjct: 649 LRADAFILFGSSLNPSHDVKHVEKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQ- 707
Query: 421 VDNNMQLINQSICHALLKWGASYLFDKLDYLHGGEFSVSAPDICSDQSLLSDIICELSPN 480
+ ++ +N+S+ HALL WGASYLFDKLD+ H E S + +QS++ +I E S
Sbjct: 708 -NKAVENLNRSLTHALLMWGASYLFDKLDHFHSSETPDSG--VSFEQSIMDGVIHEFSSI 764
Query: 481 LVYGGGEPGDNTDCNGWSFISRVQKNGGEYARNILLLGEREIKKLGNEPHTSSWSDLLKA 540
L GGE + C + + G Y+ + L GE IK E WS LL
Sbjct: 765 LSSKGGEENEVKLC----LLLEAKHAQGTYSSDSTLFGEDHIKLSDEESPNIFWSKLLGG 820
Query: 541 RRPQWKLLSVSSQRIRKTVKHFDRIIKESECENDAVVRKRRKVSIDYVDPK 591
+ P WK S + QR RK V++F+ + + +KR+K S D DP+
Sbjct: 821 KNPMWKYPSDTPQRNRKRVQYFEGSEASPKTGDGGNAKKRKKASDDVTDPR 871
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 21/256 (8%)
Query: 26 GLYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSL--NHNVKRPFLIITT 83
L+ L + L CWHK +N +IL D++ + + F+ SL V RP L++
Sbjct: 688 ALFAHQLEALNWLRRCWHKSKN-VILADEMGLGKTVSASAFLSSLYFEFGVARPCLVLVP 746
Query: 84 SSGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFY--NEDGGI------LFQILLS 135
S + W +EF AP N+V Y G+ R+ IR E++ N G F +LL+
Sbjct: 747 LSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTSYKFNVLLT 806
Query: 136 SSDIIVEDLHELRCISWEAIIIDECQRSKSLSH--IDYIRTLAAEMRLLLVSGQIKEDRA 193
+ ++++ D LR + WE +++DE R K+ + T + + R+LL ++ +
Sbjct: 807 TYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIG 866
Query: 194 DYIKLLSFLKSGHHRLNIAQMETYFSASISNLKSQLKQYVAYK--------CNSGSTRFV 245
+ LL+FL+ + E + + + +LK+ VA
Sbjct: 867 EMYNLLNFLQPSSFPSLSSFEERFHDLTSAEKVEELKKLVAPHMLRRLKKDAMQNIPPKT 926
Query: 246 EHWVPAQLSNLQLEQY 261
E VP +L+++Q E Y
Sbjct: 927 ERMVPVELTSIQAEYY 942
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 9/148 (6%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+IL+D L FG + R D + +QAA+ FN ++ +FVFL+ R C + L++
Sbjct: 1034 DILEDYLNIEFGPKTFERVDGSVAVADRQAAIARFN-QDKNRFVFLLSTRACGLGINLAT 1092
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVD 422
DTVI++DSD++P D++ + + Q +L V+RL +VEE++L LAK+ + L
Sbjct: 1093 ADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLML--- 1149
Query: 423 NNMQLINQSICHA----LLKWGASYLFD 446
+ +N+S +L+WG LF+
Sbjct: 1150 -DQLFVNKSGSQKEFEDILRWGTEELFN 1176
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
++L+D + Q Y R D +++Q +D FN K S KF FL+ R + L++
Sbjct: 625 DLLEDYCTHKKWQ--YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLAT 682
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGI---RL 419
DTVI++DSDW+P DL+ + + Q +++ ++RL + T+EE+++ L K+ + L
Sbjct: 683 ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHL 742
Query: 420 TVDN-NMQLINQSICHALLKWGASYLFDKLDYLHGGEFSVSAPDICSDQSLLSDII 474
V Q INQ ++++G+ LF D G + D D+ L D++
Sbjct: 743 VVGKLKTQNINQEELDDIIRYGSKELFASEDDEAGKSGKIHYDDAAIDKLLDRDLV 798
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 22/200 (11%)
Query: 27 LYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSLNHNVKRPFLIITTSSG 86
L+ L + L W K Q +IL D++ + ++ I + SL P L+I S
Sbjct: 273 LHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIALLASLFEENLIPHLVIAPLST 331
Query: 87 LTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFY-------------------NEDGG 127
L WE EF AP N+V+Y G R+ IR EFY ++
Sbjct: 332 LRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKR 391
Query: 128 ILFQILLSSSDIIVEDLHELRCISWEAIIIDECQR--SKSLSHIDYIRTLAAEMRLLLVS 185
I F +LL+S ++I D L+ I WE +I+DE R +K + ++ R+LL
Sbjct: 392 IKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTG 451
Query: 186 GQIKEDRADYIKLLSFLKSG 205
++ + + L+ FL +G
Sbjct: 452 TPLQNNLDELFMLMHFLDAG 471
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 318 YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQN 377
Y R D ++Q +D FN + S +F FL+ R + L++ DTVI++DSDW+P
Sbjct: 567 YERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHA 626
Query: 378 DLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVDNNMQLINQSICH--- 434
DL+ + ++ Q +++ ++RL TVEE+++ + K + L ++ + Q +C
Sbjct: 627 DLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLL---EHLVVGKQHLCQDEL 683
Query: 435 -ALLKWGASYLF 445
++K+G+ LF
Sbjct: 684 DDIIKYGSKELF 695
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 4/181 (2%)
Query: 27 LYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSLNHNVKRPFLIITTSSG 86
L+ L + L W K N +IL D++ + ++ I F+ SL P L++ S
Sbjct: 225 LHTYQLEGLNFLRYSWSKKTN-VILADEMGLGKTIQSIAFLASLFEENLSPHLVVAPLST 283
Query: 87 LTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDG-GILFQILLSSSDIIVEDLH 145
+ WE EF AP N+V+Y G+ + R I EFY +G F +LL++ +++ +
Sbjct: 284 IRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMVHPGIS 343
Query: 146 ELRCISWEAIIIDECQRSKSLSHIDY--IRTLAAEMRLLLVSGQIKEDRADYIKLLSFLK 203
L I W +IIDE R K+ Y + ++ +LL ++ + + L+ FL
Sbjct: 344 VLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLD 403
Query: 204 S 204
+
Sbjct: 404 A 404
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 318 YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQN 377
Y R D ++Q +D FN + S +F FL+ R + L++ DTVI++DSDW+P
Sbjct: 526 YERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHA 585
Query: 378 DLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVDNNMQLINQSICH--- 434
DL+ + ++ Q +++ ++RL TVEE+++ + K + L ++ + Q +C
Sbjct: 586 DLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLL---EHLVVGKQHLCQDEL 642
Query: 435 -ALLKWGASYLF 445
++K+G+ LF
Sbjct: 643 DDIIKYGSKELF 654
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 4/181 (2%)
Query: 27 LYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSLNHNVKRPFLIITTSSG 86
L+ L + L W K N +IL D++ + ++ I F+ SL P L++ S
Sbjct: 184 LHTYQLEGLNFLRYSWSKKTN-VILADEMGLGKTIQSIAFLASLFEENLSPHLVVAPLST 242
Query: 87 LTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDG-GILFQILLSSSDIIVEDLH 145
+ WE EF AP N+V+Y G+ + R I EFY +G F +LL++ +++ +
Sbjct: 243 IRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMVHPGIS 302
Query: 146 ELRCISWEAIIIDECQRSKSLSHIDY--IRTLAAEMRLLLVSGQIKEDRADYIKLLSFLK 203
L I W +IIDE R K+ Y + ++ +LL ++ + + L+ FL
Sbjct: 303 VLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLD 362
Query: 204 S 204
+
Sbjct: 363 A 363
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Query: 41 CWHKGQNALILEDQIDQERVMKVILFI--LSLNHNVKRPFLIITTSSGLTVWETEFLHLA 98
C+ +G N IL D++ + ++ + F+ L+ N+ PFL++ +S L W E
Sbjct: 600 CYEQGLNG-ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 658
Query: 99 PSANLVVYKGNKDVRSCIR----ALEFYNEDGGILFQILLSSSDIIVEDLHELRCISWEA 154
P + Y G R+ +R Y D G F IL++S ++V D R + W+
Sbjct: 659 PDLKTLPYWGGLQERTILRKNINPKRMYRRDAG--FHILITSYQLLVTDEKYFRRVKWQY 716
Query: 155 IIIDECQRSKSLSHIDYIRTLA--AEMRLLLVSGQIKEDRADYIKLLSFLKSGHHRLNIA 212
+++DE Q KS S I + L+ RLLL I+ + A+ LL F+ N
Sbjct: 717 MVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFD-NHD 775
Query: 213 QMETYFSASISN 224
Q +FS I N
Sbjct: 776 QFNEWFSKGIEN 787
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
NIL+D + R + Y+R D ++ + F + S FVFL+ R + L++
Sbjct: 1236 NILEDYMNYR--KYKYLRLDGSSTIMDRRDMVRDFQHR-SDIFVFLLSTRAGGLGINLTA 1292
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKE 415
DTVI ++SDW+P DL+ + + Q +TV+RL TVEEK+L A +
Sbjct: 1293 ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQ 1345
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 18/159 (11%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+IL + L R Q + R D +Q A+D FN S F FL+ R + L++
Sbjct: 969 DILAEYLSLRGFQ--FQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLAT 1026
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGI----- 417
DTV++FDSDW+PQNDL+ + + Q + ++R + +VEE++L AK +
Sbjct: 1027 ADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHL 1086
Query: 418 ---RLTVDNNMQL--------INQSICHALLKWGASYLF 445
+L + ++ +++ A+L++GA LF
Sbjct: 1087 VIQKLNAEGRLEKRETKKGSNFDKNELSAILRFGAEELF 1125
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 13/198 (6%)
Query: 49 LILEDQIDQERVMKVI--LFILSLNHNVKRPFLIITTSSGLTVWETEFLHLAPSANLVVY 106
+IL D++ + ++ + L L + PFL++ S L W EF P N++VY
Sbjct: 646 VILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVY 705
Query: 107 KGNKDVRSCIRALEFYNEDG---GILFQILLSSSDIIVEDLHELRCISWEAIIIDECQRS 163
G + R + EFYNE I F LL++ +++++D L I W +++DE R
Sbjct: 706 VGTRASREVCQQYEFYNEKKVGRPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRL 765
Query: 164 KSLSHIDYIRTL--AAEMRLLLVSGQIKEDRADYIKLLSFLKSGHHR------LNIAQME 215
K+ Y L + + +LL+ ++ + LL FL G + N +
Sbjct: 766 KNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKNLS 825
Query: 216 TYFSASISNLKSQLKQYV 233
++ + ++NL +L+ ++
Sbjct: 826 SFNESELANLHLELRPHI 843
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+IL+D L R Y R D ++ A+++ +N S KFVFL+ R + L++
Sbjct: 520 DILEDYLMYRGY--LYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLAT 577
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVD 422
D VIL+DSDW+PQ DL+ + Q ++ VFR + +EEKV+ A + +L +D
Sbjct: 578 ADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYK--KLALD 635
Query: 423 ---------NNMQLINQSICHALLKWGASYLFDKLD 449
+ +N+ ++++GA +F D
Sbjct: 636 ALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD 671
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 50 ILEDQIDQERVMKVILFILSLNH--NVKRPFLIITTSSGLTVWETEFLHLAPSANLVVYK 107
IL D++ + ++ I + L+ + P +++ S L W E P V +
Sbjct: 211 ILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL 270
Query: 108 GNKDVRSCIRALEFYNEDGGIL--FQILLSSSDIIVEDLHELRCISWEAIIIDECQRSKS 165
GN + R IR ED + F I ++S ++ +++ LR SW IIIDE R K+
Sbjct: 271 GNPEERRHIR------EDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKN 324
Query: 166 LSHI--DYIRTLAAEMRLLLVSGQIKEDRADYIKLLSFL 202
+ + +R + RLL+ ++ + + LL+FL
Sbjct: 325 ENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 363
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+IL+D L R Y R D ++ A+++ +N S KFVFL+ R + L++
Sbjct: 520 DILEDYLMYRGY--LYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLAT 577
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVD 422
D VIL+DSDW+PQ DL+ + Q ++ VFR + +EEKV+ A + +L +D
Sbjct: 578 ADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYK--KLALD 635
Query: 423 ---------NNMQLINQSICHALLKWGASYLFDKLD 449
+ +N+ ++++GA +F D
Sbjct: 636 ALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD 671
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 50 ILEDQIDQERVMKVILFILSLNH--NVKRPFLIITTSSGLTVWETEFLHLAPSANLVVYK 107
IL D++ + ++ I + L+ + P +++ S L W E P V +
Sbjct: 211 ILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL 270
Query: 108 GNKDVRSCIRALEFYNEDGGIL--FQILLSSSDIIVEDLHELRCISWEAIIIDECQRSKS 165
GN + R IR ED + F I ++S ++ +++ LR SW IIIDE R K+
Sbjct: 271 GNPEERRHIR------EDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKN 324
Query: 166 LSHI--DYIRTLAAEMRLLLVSGQIKEDRADYIKLLSFL 202
+ + +R + RLL+ ++ + + LL+FL
Sbjct: 325 ENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 363
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+IL+D L R Y R D ++ A+++ +N S KFVFL+ R + L++
Sbjct: 520 DILEDYLMYRGY--LYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLAT 577
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVD 422
D VIL+DSDW+PQ DL+ + Q ++ VFR + +EEKV+ A + +L +D
Sbjct: 578 ADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYK--KLALD 635
Query: 423 ---------NNMQLINQSICHALLKWGASYLFDKLD 449
+ +N+ ++++GA +F D
Sbjct: 636 ALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD 671
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 50 ILEDQIDQERVMKVILFILSLNH--NVKRPFLIITTSSGLTVWETEFLHLAPSANLVVYK 107
IL D++ + ++ I + L+ + P +++ S L W E P V +
Sbjct: 211 ILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL 270
Query: 108 GNKDVRSCIRALEFYNEDGGIL--FQILLSSSDIIVEDLHELRCISWEAIIIDECQRSKS 165
GN + R IR ED + F I ++S ++ +++ LR SW IIIDE R K+
Sbjct: 271 GNPEERRHIR------EDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKN 324
Query: 166 LSHI--DYIRTLAAEMRLLLVSGQIKEDRADYIKLLSFL 202
+ + +R + RLL+ ++ + + LL+FL
Sbjct: 325 ENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 363
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+IL+D L R Q Y R D ++ A+++ +N S KFVFL+ R + L++
Sbjct: 525 DILEDYLMYRGYQ--YCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLAT 582
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVD 422
D VIL+DSDW+PQ DL+ + Q ++ VFR + +E KV+ A + +L +D
Sbjct: 583 ADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYK--KLALD 640
Query: 423 ---------NNMQLINQSICHALLKWGASYLFDKLD 449
+ +N+ ++++GA +F D
Sbjct: 641 ALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD 676
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 27 LYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSLNH--NVKRPFLIITTS 84
L + L+ + L + G N IL D++ + ++ I + L+ + P +++
Sbjct: 194 LRDYQLAGLNWLIRLYENGING-ILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPK 252
Query: 85 SGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDGGILFQILLSSSDIIVEDL 144
S L W E P V + GN + R IR F I ++S ++ +++
Sbjct: 253 STLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLV----AGKFDICVTSFEMAIKEK 308
Query: 145 HELRCISWEAIIIDECQRSKSLSHI--DYIRTLAAEMRLLLVSGQIKEDRADYIKLLSFL 202
LR SW IIIDE R K+ + + +R + RLL+ ++ + + LL+FL
Sbjct: 309 TTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 368
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+IL+D L R Q Y R D ++ A+++ +N S KFVFL+ R + L++
Sbjct: 525 DILEDYLMYRGYQ--YCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLAT 582
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVD 422
D VIL+DSDW+PQ DL+ + Q ++ VFR + +E KV+ A + +L +D
Sbjct: 583 ADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYK--KLALD 640
Query: 423 ---------NNMQLINQSICHALLKWGASYLFDKLD 449
+ +N+ ++++GA +F D
Sbjct: 641 ALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD 676
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 27 LYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSLNH--NVKRPFLIITTS 84
L + L+ + L + G N IL D++ + ++ I + L+ + P +++
Sbjct: 194 LRDYQLAGLNWLIRLYENGING-ILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPK 252
Query: 85 SGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDGGILFQILLSSSDIIVEDL 144
S L W E P V + GN + R IR F I ++S ++ +++
Sbjct: 253 STLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLV----AGKFDICVTSFEMAIKEK 308
Query: 145 HELRCISWEAIIIDECQRSKSLSHI--DYIRTLAAEMRLLLVSGQIKEDRADYIKLLSFL 202
LR SW IIIDE R K+ + + +R + RLL+ ++ + + LL+FL
Sbjct: 309 TTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 368
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 318 YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQN 377
Y+R D + A +D FN S F+FL+ IR V L + DTVILFD+DW+PQ
Sbjct: 1116 YLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQV 1175
Query: 378 DLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVDNNMQLINQSI 432
DL+ + Q + V R + +VEE+V R + ++ + + NQSI
Sbjct: 1176 DLQAQARAHRIGQKKDVLVLRFETVNSVEEQV--------RASAEHKLGVANQSI 1222
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 27/186 (14%)
Query: 24 LPGLYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSL--NHNVKRPFLII 81
L LYN HL+ IL D++ + ++VI I L N + PFL++
Sbjct: 765 LVSLYNNHLNG---------------ILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 82 TTSSGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDGGILFQILLSSSDIIV 141
SS L W++E APS + +VY G D R + + ++ F +LL++ + ++
Sbjct: 810 VPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQK----FNVLLTTYEYLM 865
Query: 142 --EDLHELRCISWEAIIIDECQRSKSLS---HIDYIRTLAAEMRLLLVSGQIKEDRADYI 196
D +L I W IIIDE R K+ S + D ++ + RLLL ++ + +
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNAD-LKHYVSSHRLLLTGTPLQNNLEELW 924
Query: 197 KLLSFL 202
LL+FL
Sbjct: 925 ALLNFL 930
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 318 YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQN 377
Y+R D + A +D FN S F+FL+ IR V L + DTVILFD+DW+PQ
Sbjct: 1116 YLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQV 1175
Query: 378 DLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVDNNMQLINQSI 432
DL+ + Q + V R + +VEE+V R + ++ + + NQSI
Sbjct: 1176 DLQAQARAHRIGQKKDVLVLRFETVNSVEEQV--------RASAEHKLGVANQSI 1222
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 27/186 (14%)
Query: 24 LPGLYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSL--NHNVKRPFLII 81
L LYN HL+ IL D++ + ++VI I L N + PFL++
Sbjct: 765 LVSLYNNHLNG---------------ILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 82 TTSSGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDGGILFQILLSSSDIIV 141
SS L W++E APS + +VY G D R + + ++ F +LL++ + ++
Sbjct: 810 VPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQK----FNVLLTTYEYLM 865
Query: 142 --EDLHELRCISWEAIIIDECQRSKSLS---HIDYIRTLAAEMRLLLVSGQIKEDRADYI 196
D +L I W IIIDE R K+ S + D ++ + RLLL ++ + +
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNAD-LKHYVSSHRLLLTGTPLQNNLEELW 924
Query: 197 KLLSFL 202
LL+FL
Sbjct: 925 ALLNFL 930
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 318 YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQN 377
Y+R D + A +D FN S F+FL+ IR V L + DTVILFD+DW+PQ
Sbjct: 1116 YLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQV 1175
Query: 378 DLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLTVDNNMQLINQSI 432
DL+ + Q + V R + +VEE+V R + ++ + + NQSI
Sbjct: 1176 DLQAQARAHRIGQKKDVLVLRFETVNSVEEQV--------RASAEHKLGVANQSI 1222
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 27/186 (14%)
Query: 24 LPGLYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSL--NHNVKRPFLII 81
L LYN HL+ IL D++ + ++VI I L N + PFL++
Sbjct: 765 LVSLYNNHLNG---------------ILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 82 TTSSGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDGGILFQILLSSSDIIV 141
SS L W++E APS + +VY G D R + + ++ F +LL++ + ++
Sbjct: 810 VPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQK----FNVLLTTYEYLM 865
Query: 142 --EDLHELRCISWEAIIIDECQRSKSLS---HIDYIRTLAAEMRLLLVSGQIKEDRADYI 196
D +L I W IIIDE R K+ S + D ++ + RLLL ++ + +
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNAD-LKHYVSSHRLLLTGTPLQNNLEELW 924
Query: 197 KLLSFL 202
LL+FL
Sbjct: 925 ALLNFL 930
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 27 LYNQHLSYVTKLHMCWHKGQNALILEDQIDQERVMKVILFILSLNHN-VKRPFLIITTSS 85
L + L V L W G N IL DQ+ + ++ I F+ L N + P+L+I S
Sbjct: 202 LKSYQLKGVKWLISLWQNGLNG-ILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLS 260
Query: 86 GLTVWETEFLHLAPSANLVVYKGNKDVRSCIRALEFYNEDGGILFQILLSSSDIIVEDLH 145
L+ W E PS N ++Y G+K+ R +R + + G F I+++S ++ + D
Sbjct: 261 TLSNWFNEIARFTPSINAIIYHGDKNQRDELRR-KHMPKTVGPKFPIVITSYEVAMNDAK 319
Query: 146 E-LRCISWEAIIIDECQRSKS--LSHIDYIRTLAAEMRLLLVSGQIKEDRADYIKLLSFL 202
LR W+ ++IDE R K+ + ++ L + +LLL ++ + ++ LL+F+
Sbjct: 320 RILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFI 379
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+I+D ++ + C R D +++ + F+D++S +FL+ R + L++
Sbjct: 554 DIMDYYFSEKGFEVC--RIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTA 611
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRL 419
DT IL+DSDW+PQ DL+ + + Q + V+RL + ++E +VL A ++L
Sbjct: 612 ADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKL 668
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 12/159 (7%)
Query: 50 ILEDQIDQERVMKVILFILSL--NHNVKRPFLIITTSSGLTVWETEFLHLAPSANLVVYK 107
IL D++ + ++ I I L + ++ P LI+ + L WE EF APS + +Y
Sbjct: 408 ILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSISAFLYD 467
Query: 108 GNKDVRSCIRALEFYNEDGGILFQILLSSSDIIVEDLHELRCISWEAIIIDECQRSKSLS 167
G+K+ R+ IRA G F +L++ D+I+ D L+ I W +I+DE R K+
Sbjct: 468 GSKEKRTEIRA-----RIAGGKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKN-H 521
Query: 168 HIDYIRTLAA----EMRLLLVSGQIKEDRADYIKLLSFL 202
+TL + RLLL I+ + LL+FL
Sbjct: 522 ECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFL 560
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%)
Query: 318 YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQN 377
Y+R D ++ L FN+ +S F+FL+ R + L + DT+I+FDSDW+PQ
Sbjct: 738 YLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQM 797
Query: 378 DLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGI 417
D + + Q ++ VF L S ++EE +L AK+ +
Sbjct: 798 DQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKM 837
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 318 YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQN 377
Y+R D ++ L FN+ +S F+FL+ R + L + DTVI+FDSDW+PQ
Sbjct: 756 YLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQM 815
Query: 378 DLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGI 417
D + + Q ++ VF L S +VEE +L AK+ +
Sbjct: 816 DQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKM 855
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 50 ILEDQIDQERVMKVILFILSL--NHNVKRPFLIITTSSGLTVWETEFLHLAPSANLVVYK 107
IL D++ + ++ I I L N V P+LI+ + L W EF PS +Y
Sbjct: 425 ILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVAPKAVLPNWVNEFATWVPSIAAFLYD 484
Query: 108 GNKDVRSCIRALEFYNEDGGILFQILLSSSDIIVEDLHELRCISWEAIIIDECQRSKSLS 167
G + R IR E +G F +L++ D+I+ D L+ I W +I+DE R K+
Sbjct: 485 GRLEERKAIR--EKIAGEGK--FNVLITHYDLIMRDKAFLKKIEWYYMIVDEGHRLKNHE 540
Query: 168 HIDYIRTLAA----EMRLLLVSGQIKEDRADYIKLLSFLKSGHHRLNIAQ-METYFSASI 222
+TL + RLLL I+ + LL+FL H N Q E +F+A
Sbjct: 541 SA-LAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLP--HIFNSVQNFEEWFNAPF 597
Query: 223 SN 224
++
Sbjct: 598 AD 599
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 59 RVMKVILFILSLNHNVKRPFLIITTSSGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRA 118
+VM +I +++ N P LII ++ L W++E PS + + Y G KD RS +
Sbjct: 1015 QVMALIAYLMEFKGNYG-PHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKL-- 1071
Query: 119 LEFYNEDGGILFQILLSSSDIIVEDLHELRCISWEAIIIDECQRSKSLSHIDYIRTL--- 175
F E + F +L+++ + I+ D +L + W+ IIIDE QR K + R L
Sbjct: 1072 --FSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV-LARDLDRY 1128
Query: 176 AAEMRLLLVSGQIKED 191
+ RLLL ++ D
Sbjct: 1129 RCQRRLLLTGTPLQND 1144
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
NIL+D + R + Y+R D ++ + F + S FVFL+ R + L++
Sbjct: 1269 NILEDYMNYR--KYKYLRLDGSSTIMDRRDMVRDFQHR-SDIFVFLLSTRAGGLGINLTA 1325
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKE 415
DTVI ++SDW+P DL+ + + Q +TV+RL TVEEK+L A +
Sbjct: 1326 ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQ 1378
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 313 FGQDC------YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTV 366
F Q C ++R D SK+Q ++ ND +F FL+ + + L + +
Sbjct: 567 FAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRL 626
Query: 367 ILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVL--MLAKEGIR 418
+LFD DW+P ND + ++ Q ++ V+R S T+EEKV ++KEG++
Sbjct: 627 VLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQ 680
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSS 362
+IL D + R + Y R D ++ AA+ F+ S FVF++ R + L +
Sbjct: 398 DILQDFMELR--RYSYERLDGSVRAEERFAAIKNFSVDGSNAFVFMISTRAGGVGLNLVA 455
Query: 363 VDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRLT-- 420
DTVI ++ DW+PQ D + LQ+ Q S + L + +VEE +L A+ ++L+
Sbjct: 456 ADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHN 515
Query: 421 -VDNNMQ 426
V +NM+
Sbjct: 516 VVGDNME 522
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 45 GQNALILEDQIDQERVMKVILFI--LSLNHNVKRPFLIITTSSGLTVWETEFLHLAPSAN 102
G N ++ DQ+ + ++ I F+ L + PFL++ S W +E P+
Sbjct: 69 GVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLE 128
Query: 103 LVVYKGNKDVRSCIRALEFYNEDGGILFQILLSSSDIIVEDLHELRCISWEAIIIDECQR 162
++ Y G+K R +R Y+ + F +LL++ DI + D L I W+ IIDE QR
Sbjct: 129 VLRYVGDKYCRLDMRK-SMYDHGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQR 187
Query: 163 SKSLSHIDY---IRTLAAEMRLLLVSGQIKEDRADYIKLLSF 201
K+ + + Y + RLL+ I+ + + L+ F
Sbjct: 188 LKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHF 229
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 313 FGQDC------YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTV 366
F Q C ++R D SK+Q ++ ND +F FL+ + + L + +
Sbjct: 565 FAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRL 624
Query: 367 ILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVL--MLAKEGIR 418
+LFD DW+P ND + ++ Q ++ V+R S T+EEKV ++KEG++
Sbjct: 625 VLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQ 678
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 317 CYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQ 376
Y R D ++ A +D FN+ E FVF++ + L+ + VI+FD DW+P
Sbjct: 769 SYRRMDGLTPVKQRMALIDEFNNSED-MFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPS 827
Query: 377 NDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKV 409
ND++ ++ Q +TV+RL + T+EEKV
Sbjct: 828 NDMQARERAWRIGQKKDVTVYRLITRGTIEEKV 860
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 59 RVMKVILFILSLNHNVKRPFLIITTSSGLTVWETEFLHLAPSANLVVYKGNKDVRSCIRA 118
+VM +I +++ N P LII ++ L W++E PS + + Y G KD RS + +
Sbjct: 1015 QVMALIAYLMEFKGNYG-PHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFS 1073
Query: 119 LEFYNEDGGILFQILLSSSDIIVEDLHELRCISWEAIIIDECQRSKSLSHIDYIRTL--- 175
+ + F +L+++ + I+ D +L + W+ IIIDE QR K + R L
Sbjct: 1074 QVKFEK-----FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV-LARDLDRY 1127
Query: 176 AAEMRLLLVSGQIKED 191
+ RLLL ++ D
Sbjct: 1128 RCQRRLLLTGTPLQND 1143
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 303 NILDDVLCQRFGQDCYVRYDRGYIKSKKQAALDTFNDKE----------SGKFVFLMEIR 352
+IL D + R + Y R D ++ AA+ F+ K S FVF++ R
Sbjct: 407 DILQDFMELR--RYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTR 464
Query: 353 DCLPSVKLSSVDTVILFDSDWDPQNDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLML 412
+ L + DTVI ++ DW+PQ D + LQ+ Q S + L + +VEE +L
Sbjct: 465 AGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRR 524
Query: 413 AKEGIRLT---VDNNMQ 426
A+ ++L+ V +NM+
Sbjct: 525 AERKLQLSHNVVGDNME 541
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 10/167 (5%)
Query: 45 GQNALILEDQIDQERVMKVILFI--LSLNHNVKRPFLIITTSSGLTVWETEFLHLAPSAN 102
G N ++ DQ+ + ++ I F+ L + PFL++ S W +E P+
Sbjct: 69 GVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLE 128
Query: 103 LVVYKGNK----DVRSCIRALEFYNEDGGIL-FQILLSSSDIIVEDLHELRCISWEAIII 157
++ Y G+K D+R + + G L F +LL++ DI + D L I W+ II
Sbjct: 129 VLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAII 188
Query: 158 DECQRSKSLSHIDY---IRTLAAEMRLLLVSGQIKEDRADYIKLLSF 201
DE QR K+ + + Y + RLL+ I+ + + L+ F
Sbjct: 189 DEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHF 235
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 317 CYVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQ 376
Y+R D ++Q + FN F+F++ R + L DTVI +DSDW+P
Sbjct: 1117 TYMRLDGSTPPEERQTLMQRFN-TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPA 1175
Query: 377 NDLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKE 415
D + + Q ++ ++RL S T+EE +L A +
Sbjct: 1176 MDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQ 1214
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 318 YVRYDRGYIKSKKQAALDTFNDKESGKFVFLMEIRDCLPSVKLSSVDTVILFDSDWDPQN 377
Y R D + +Q +DTFN+ +S F L+ R + L+ DTVI+ D D++PQ
Sbjct: 631 YRRLDGSTQVTDRQTIVDTFNNDKS-IFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQI 689
Query: 378 DLRCLQKMSVSSQFSQLTVFRLYSYFTVEEKVLMLAKEGIRL 419
D + + Q +T+FRL + TV+E + +AK + L
Sbjct: 690 DRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVL 731