Miyakogusa Predicted Gene

Lj0g3v0081419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0081419.1 Non Chatacterized Hit- tr|B9REU3|B9REU3_RICCO
Pre-rRNA-processing protein TSR2, putative OS=Ricinus
,48.03,3e-19,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
seg,NULL,CUFF.4227.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27990.1 | Symbols:  | Pre-rRNA-processing protein TSR2, cons...    55   1e-08
AT3G22510.1 | Symbols:  | Pre-rRNA-processing protein TSR2, cons...    47   2e-06

>AT5G27990.1 | Symbols:  | Pre-rRNA-processing protein TSR2,
           conserved region | chr5:10017358-10018265 FORWARD
           LENGTH=184
          Length = 184

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 19/123 (15%)

Query: 4   LNVEVEDGSVEEVAENLMVMHEECLEGNFRSIEILKEANLKQAAHPRVTQIVXXXXXXXX 63
           LN   EDGSV+EVA  L+ ++E+C  GN+  +E L+      A + + +  V        
Sbjct: 81  LNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELR------ATYSQTSASVVKVSNGDD 134

Query: 64  XXXXXXXIIGASNSSNMDVDIPKSESDMNSVNRPVNGTLPKVAAEADDEWTVVSNRRNKG 123
                        +++M VD    + +   V+ PV          ADD WTVVS+R+NKG
Sbjct: 135 EESDDED---DDQTTDMMVDASNQKQEAMPVDEPV----------ADDGWTVVSSRKNKG 181

Query: 124 RKN 126
           ++N
Sbjct: 182 KRN 184


>AT3G22510.1 | Symbols:  | Pre-rRNA-processing protein TSR2,
           conserved region | chr3:7973544-7974087 FORWARD
           LENGTH=124
          Length = 124

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 1   MLSLNVEVEDGSVEEVAENLMVMHEECLEGNF 32
           +LS N E+EDGS+EEVAE LM++HEE L G  
Sbjct: 93  LLSFNTEIEDGSIEEVAEQLMILHEEHLRGTL 124