Miyakogusa Predicted Gene

Lj0g3v0081359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0081359.1 Non Chatacterized Hit- tr|Q9LHP2|Q9LHP2_ARATH
Putative serine/arginine-rich protein OS=Arabidopsis
t,60.31,2e-18,seg,NULL; SERINE/ARGININE RICH SPLICING
FACTOR,NULL,CUFF.4434.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa...    55   1e-08
AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicin...    55   2e-08
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik...    55   2e-08
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik...    55   2e-08

>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
           factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
          Length = 262

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 25/26 (96%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDG +LLGRELTVVFAEENRKKPTEM
Sbjct: 98  MDGYLLLGRELTVVFAEENRKKPTEM 123


>AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicing
           factor 33 | chr1:20630676-20632695 FORWARD LENGTH=300
          Length = 300

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 25/26 (96%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDG +LLGRELTVVFAEENRKKPTEM
Sbjct: 109 MDGYLLLGRELTVVFAEENRKKPTEM 134


>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
           splicing factor 33 | chr1:20630676-20632695 FORWARD
           LENGTH=287
          Length = 287

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 25/26 (96%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDG +LLGRELTVVFAEENRKKPTEM
Sbjct: 97  MDGYLLLGRELTVVFAEENRKKPTEM 122


>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
           splicing factor 33 | chr1:20630676-20632567 FORWARD
           LENGTH=220
          Length = 220

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 25/26 (96%)

Query: 1   MDGQILLGRELTVVFAEENRKKPTEM 26
           MDG +LLGRELTVVFAEENRKKPTEM
Sbjct: 97  MDGYLLLGRELTVVFAEENRKKPTEM 122