Miyakogusa Predicted Gene

Lj0g3v0081319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0081319.1 Non Chatacterized Hit- tr|I0Z8I0|I0Z8I0_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,28.91,8e-19,seg,NULL,CUFF.4210.1
         (265 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16650.1 | Symbols: PRORP2 | proteinaceous RNase P 2 | chr2:7...   234   4e-62
AT4G21900.1 | Symbols: PRORP3 | proteinaceous RNase P 3 | chr4:1...   220   9e-58
AT2G32230.1 | Symbols: PRORP1 | proteinaceous RNase P 1 | chr2:1...   166   2e-41
AT5G60430.2 | Symbols:  | drug transmembrane transporters;antipo...    94   7e-20
AT5G60430.1 | Symbols:  | drug transmembrane transporters;antipo...    94   7e-20

>AT2G16650.1 | Symbols: PRORP2 | proteinaceous RNase P 2 |
           chr2:7215937-7218061 REVERSE LENGTH=528
          Length = 528

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 133/275 (48%), Positives = 159/275 (57%), Gaps = 13/275 (4%)

Query: 1   MSALGITPNEASIATVARLAAAKGDASYAFDLAK---NVGNYSVAPRLRTYDPALFCFCE 57
           M + GI+PNEAS+ +VARLAAAKG+  YAF + K   +VG  S+ PRLRTY PAL CFCE
Sbjct: 100 MVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSI-PRLRTYAPALLCFCE 158

Query: 58  RLDADMAYEVEEHMXXXXXXXXXXXXXXXXXXSAKRGRGEKVYEYLHKLRSAVSCVGEST 117
           +L+A+  YEVEEHM                  SA  GR  KVY YLHKLR  V CV E T
Sbjct: 159 KLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLREYVGCVSEET 218

Query: 118 AVVIEEWFRGGEARGVGD-AAGLDGGRVREXXXXXXXXXXXXXXXXXXDWVVCRTSXXXX 176
             +IEEWF G +A  VGD   G D G +RE                   W V +      
Sbjct: 219 LKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKWTV-KKGNVSS 277

Query: 177 XXXXXXXXERLACVDIDDEDVEKFGKSIAALAVGREVKAN-------FSEFQAWLEKHTH 229
                   E+LACVD ++ + +KF  S+ ALA+ R+ K N       FSEFQ WLEKH  
Sbjct: 278 TGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEFQDWLEKHGD 337

Query: 230 YEAIVDGANVGLYQQNFADGGFSTCQLDGVVKELY 264
           YEAIVDGAN+GLYQQNF DG FS  QL+ V+KELY
Sbjct: 338 YEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELY 372


>AT4G21900.1 | Symbols: PRORP3 | proteinaceous RNase P 3 |
           chr4:11616567-11619349 REVERSE LENGTH=576
          Length = 576

 Score =  220 bits (560), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 130/276 (47%), Positives = 154/276 (55%), Gaps = 13/276 (4%)

Query: 1   MSALGITPNEASIATVARLAAAKGDASYAFDLAKN---VGNYSVAPRLRTYDPALFCFCE 57
           M + GI+PNE+S+  VARLAAAKGD  YAF L K+   VG  SV PRLRTY PAL CFC+
Sbjct: 159 MVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSV-PRLRTYAPALLCFCD 217

Query: 58  RLDADMAYEVEEHMXXXXXXXXXXXXXXXXXXSAKRGRGEKVYEYLHKLRSAVSCVGEST 117
            L+A+  YEVE+HM                  SA  GR  KVY YL KLR  V CV E T
Sbjct: 218 TLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRECVGCVSEET 277

Query: 118 AVVIEEWFRGGEARGVGD-AAGLDGGRVREXXXXXXXXXXXXXXXXXXDWVVCRTSXXXX 176
           +  IEEWF G +A  V D   G D   +R                    W+V +      
Sbjct: 278 SKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKWIV-KKGNVSS 336

Query: 177 XXXXXXXXERLACVDIDDEDVEKFGKSIAALAVGREVKAN-------FSEFQAWLEKHTH 229
                   E LACVD ++ + E F  S+  LA+ R+ K N       FSEFQ WLEKH  
Sbjct: 337 AGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEFQEWLEKHGD 396

Query: 230 YEAIVDGANVGLYQQNFADGGFSTCQLDGVVKELYS 265
           YEAI+DGAN+GLYQQNFADGGFS  QL+ VVKELY+
Sbjct: 397 YEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYN 432


>AT2G32230.1 | Symbols: PRORP1 | proteinaceous RNase P 1 |
           chr2:13679608-13681756 REVERSE LENGTH=572
          Length = 572

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 128/256 (50%), Gaps = 6/256 (2%)

Query: 6   ITPNEASIATVARLAAAKGDASYAFDLAKNVGNYSVAPRLRTYDPALFCFCERLDADMAY 65
           + PNEA+    ARLA AK D   AFD+ K +  + + PRLR+Y PALF FC + DAD AY
Sbjct: 172 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 231

Query: 66  EVEEHMXXXXXXXXXXXXXXXXXXSAKRGRGEKVYEYLHKLRSAVSCVGESTAVVIEEWF 125
           EV+ HM                  S      +KVY+ L +LR  V  V +ST  +IEEWF
Sbjct: 232 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 291

Query: 126 RGGEARGVGDAAGLDGGRVREXXXXXXXXXXXXXXXXXXDWVVCRTSXXXXXXXXXXXXE 185
           +   A   G     D  ++R+                   W V RT             E
Sbjct: 292 KSEVATKTG-VKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTE-MDENGVCKCCKE 349

Query: 186 RLACVDIDDEDVEKFGKSIAALAVGREVKANFSEFQAWLEKHTHYEAIVDGANVGLYQQN 245
           +L C+DI+  + E F  S+  LA  REVKANF++FQ WLE+H  ++A++DGAN+GL  Q 
Sbjct: 350 KLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQR 409

Query: 246 FADGGFSTCQLDGVVK 261
                FS  QL+  V+
Sbjct: 410 ----SFSFFQLNNTVQ 421


>AT5G60430.2 | Symbols:  | drug transmembrane
           transporters;antiporters | chr5:24302386-24303068
           FORWARD LENGTH=156
          Length = 156

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 56/79 (70%), Gaps = 7/79 (8%)

Query: 185 ERLACVDIDDEDVEKFGKSIAALAVGREVKAN-------FSEFQAWLEKHTHYEAIVDGA 237
           E+LACVD ++ + +KF  S+ ALA+ R+ K N       FSEFQ WLEKH  YEAIVDGA
Sbjct: 42  EQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEFQDWLEKHGDYEAIVDGA 101

Query: 238 NVGLYQQNFADGGFSTCQL 256
           N+GLYQQNF DG FS  Q+
Sbjct: 102 NIGLYQQNFVDGSFSLSQV 120


>AT5G60430.1 | Symbols:  | drug transmembrane
           transporters;antiporters | chr5:24302386-24303068
           FORWARD LENGTH=156
          Length = 156

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 56/79 (70%), Gaps = 7/79 (8%)

Query: 185 ERLACVDIDDEDVEKFGKSIAALAVGREVKAN-------FSEFQAWLEKHTHYEAIVDGA 237
           E+LACVD ++ + +KF  S+ ALA+ R+ K N       FSEFQ WLEKH  YEAIVDGA
Sbjct: 42  EQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEFQDWLEKHGDYEAIVDGA 101

Query: 238 NVGLYQQNFADGGFSTCQL 256
           N+GLYQQNF DG FS  Q+
Sbjct: 102 NIGLYQQNFVDGSFSLSQV 120