Miyakogusa Predicted Gene

Lj0g3v0081029.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0081029.1 tr|B9IF24|B9IF24_POPTR Methionine sulfoxide
reductase type (Fragment) OS=Populus trichocarpa
GN=Ptrc,69.12,2e-19,no description,Peptide methionine sulphoxide
reductase MsrA; PEPTIDE METHIONINE SULFOXIDE REDUCTASE,,CUFF.4194.1
         (95 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25130.1 | Symbols: PMSR4 | peptide met sulfoxide reductase 4...   149   4e-37
AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfox...   144   1e-35
AT5G07470.1 | Symbols: PMSR3, ATMSRA3 | peptidemethionine sulfox...   141   1e-34
AT5G07460.1 | Symbols: PMSR2, ATMSRA2 | peptidemethionine sulfox...   129   6e-31

>AT4G25130.1 | Symbols: PMSR4 | peptide met sulfoxide reductase 4 |
           chr4:12898802-12899998 REVERSE LENGTH=258
          Length = 258

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 79/96 (82%), Gaps = 2/96 (2%)

Query: 2   PSMNLLNRLGFGSTRSPENMDSS--IAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVP 59
           P  NL NRLGFGS    +   SS  IAQGPDDD+P+ GQQFAQFGAGCFWGVELA+QRVP
Sbjct: 53  PMNNLFNRLGFGSRPQAQADPSSAAIAQGPDDDVPSSGQQFAQFGAGCFWGVELAYQRVP 112

Query: 60  GVTKTEVGYSQGILHNPSYEDVSSGTTNHAEIVRVQ 95
           GVTKTEVGYS GI+HNPSYEDV +GTT H E+VRVQ
Sbjct: 113 GVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQ 148


>AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine
          sulfoxide reductase 1 | chr5:24775107-24776147 FORWARD
          LENGTH=202
          Length = 202

 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 79/93 (84%), Gaps = 2/93 (2%)

Query: 4  MNLLNRLGFGSTRSPENMDSS-IAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVT 62
          MN+LN+LG GS+R   NMD S IAQ  DD+ PAPG QF QFGAGCFW VELA+QRVPGVT
Sbjct: 1  MNILNKLGIGSSRQT-NMDPSPIAQVIDDEAPAPGNQFTQFGAGCFWSVELAYQRVPGVT 59

Query: 63 KTEVGYSQGILHNPSYEDVSSGTTNHAEIVRVQ 95
          +TEVGYSQGI H+PSY+DV SGTTNHAEIVRVQ
Sbjct: 60 QTEVGYSQGITHDPSYKDVCSGTTNHAEIVRVQ 92


>AT5G07470.1 | Symbols: PMSR3, ATMSRA3 | peptidemethionine
          sulfoxide reductase 3 | chr5:2362760-2364286 REVERSE
          LENGTH=202
          Length = 202

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 77/93 (82%), Gaps = 2/93 (2%)

Query: 4  MNLLNRLGFGSTRSPENMDSS-IAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVT 62
          MN+LNRLG GS+    NMD S IAQG DDD PAPG QFAQFGAGCFWGVELAFQRVPGVT
Sbjct: 1  MNILNRLGLGSS-GQTNMDPSPIAQGNDDDTPAPGNQFAQFGAGCFWGVELAFQRVPGVT 59

Query: 63 KTEVGYSQGILHNPSYEDVSSGTTNHAEIVRVQ 95
          +TE GY+QG + NPSY DV SGTT H+E+VRVQ
Sbjct: 60 QTEAGYTQGTVDNPSYGDVCSGTTGHSEVVRVQ 92


>AT5G07460.1 | Symbols: PMSR2, ATMSRA2 | peptidemethionine sulfoxide
           reductase 2 | chr5:2360844-2361885 REVERSE LENGTH=218
          Length = 218

 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 66/79 (83%)

Query: 17  SPENMDSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGILHNP 76
            P  + S IAQ PD+D+PAPG +FA+F AGCFWGVELAFQR+PGVT TEVGY+ GI HNP
Sbjct: 30  KPAIVPSPIAQEPDNDVPAPGNEFAEFAAGCFWGVELAFQRIPGVTVTEVGYTHGISHNP 89

Query: 77  SYEDVSSGTTNHAEIVRVQ 95
           SYEDV + TTNHAE+VRVQ
Sbjct: 90  SYEDVCTNTTNHAEVVRVQ 108