Miyakogusa Predicted Gene

Lj0g3v0080979.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080979.2 Non Chatacterized Hit- tr|B9RSM2|B9RSM2_RICCO
Ubiquitin-protein ligase, putative OS=Ricinus
communis,34.08,7e-19,coiled-coil,NULL,CUFF.4175.2
         (205 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38690.1 | Symbols:  | Zinc-finger domain of monoamine-oxidas...    89   3e-18
AT1G67780.1 | Symbols:  | Zinc-finger domain of monoamine-oxidas...    63   1e-10
AT1G67270.1 | Symbols:  | Zinc-finger domain of monoamine-oxidas...    60   1e-09

>AT5G38690.1 | Symbols:  | Zinc-finger domain of monoamine-oxidase A
           repressor R1 protein | chr5:15479424-15482992 REVERSE
           LENGTH=572
          Length = 572

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 9/177 (5%)

Query: 1   MEEGEAETILRELVRKQNLRSGENTLAVEFQTRLLTLLRTASGHESPSLTTIDGNCSWLN 60
           + +G+AE ++RE++  ++ R  + +   +   +LLT++    G  S  L+  D   SW  
Sbjct: 292 LRKGQAECVIREMLSGRSKRRQQYSTLTQMIIQLLTVILEDRGETSVCLSATDP--SWFT 349

Query: 61  ALGDLTLQSPLVLKDFPVEMLNEGLSGYCNLSLCDKLRLLTFICDEVLNSEKVRSHIEKE 120
            +G+   +S + L DFP EM  +G+S Y  L+   +L+LL F+CDE L +  +R+ I+ +
Sbjct: 350 TIGECLSESEVKLDDFPPEMFEKGISQYEKLNSSKRLKLLNFLCDETLGTLVMRNCIDSQ 409

Query: 121 NLNIEKQRKEAKALFAVAKEK------NLLEETAKTVHS-NGDPGSSTEQDAVVLKL 170
           N+   +++KEAK     AK+K       L +E A+ V + NG P   TE DA+V ++
Sbjct: 410 NIESVERKKEAKEKINAAKDKEKQLKQKLQDELAQAVKAKNGIPLLITEHDAIVSRI 466


>AT1G67780.1 | Symbols:  | Zinc-finger domain of monoamine-oxidase A
           repressor R1 protein | chr1:25412816-25415530 FORWARD
           LENGTH=512
          Length = 512

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 5/122 (4%)

Query: 1   MEEGEAETILRELVR-KQNLRSGENTLAVEFQTRLLTLLRTASGHESPSLTTIDGNCSWL 59
           ++EG+AET++REL    +N R  +    ++   +LL L+ +     S SL+  D   +W 
Sbjct: 235 LKEGQAETVVRELFSCGRNTRRQQYCSIIQLMIQLLDLI-SKDREMSLSLSVSD---NWF 290

Query: 60  NALGDLTLQSPLVLKDFPVEMLNEGLSGYCNLSLCDKLRLLTFICDEVLNSEKVRSHIEK 119
            ALG++ LQS ++  +FP E    G++ Y  +    +L+LL F+CDE L++  +R+ I+ 
Sbjct: 291 TALGEILLQSEVLSDEFPPETFETGVAEYEKMDASRRLKLLNFVCDESLSTWAMRNCIKS 350

Query: 120 EN 121
           ++
Sbjct: 351 QS 352


>AT1G67270.1 | Symbols:  | Zinc-finger domain of monoamine-oxidase A
           repressor R1 protein | chr1:25183177-25185793 REVERSE
           LENGTH=541
          Length = 541

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 4/118 (3%)

Query: 1   MEEGEAETILREL-VRKQNLRSGENTLAVEFQTRLLTLLRTASGHESPSLTTIDGNCSWL 59
           ++EG AETI+REL +  +N R  +     +   +LL L+ +     S SL+  D   SW 
Sbjct: 238 LKEGHAETIVRELFICGRNTRRQQYCSITQMMIQLLDLI-SKDREMSLSLSATDS--SWF 294

Query: 60  NALGDLTLQSPLVLKDFPVEMLNEGLSGYCNLSLCDKLRLLTFICDEVLNSEKVRSHI 117
            A+G++  +S ++  + P+E    G++ Y  ++   KL+LL F+CDE L++  +R++I
Sbjct: 295 TAIGEILSKSEVLSDELPLETFVGGVAAYEKMNASRKLKLLNFLCDESLSTWAMRNYI 352