Miyakogusa Predicted Gene

Lj0g3v0080839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080839.1 Non Chatacterized Hit- tr|I3T2G7|I3T2G7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.14,0,Alpha-L
RNA-binding motif,NULL; 40S RIBOSOMAL PROTEIN S9,NULL; 30S 40S
RIBOSOMAL PROTEIN,Ribosomal p,CUFF.4190.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39850.1 | Symbols:  | Ribosomal protein S4 | chr5:15950053-1...   190   2e-49
AT5G15200.1 | Symbols:  | Ribosomal protein S4 | chr5:4935124-49...   186   2e-48
AT5G15200.2 | Symbols:  | Ribosomal protein S4 | chr5:4935602-49...   108   6e-25

>AT5G39850.1 | Symbols:  | Ribosomal protein S4 |
           chr5:15950053-15951171 FORWARD LENGTH=197
          Length = 197

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/98 (91%), Positives = 96/98 (97%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 60
           M RYGLLDETQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQ
Sbjct: 82  MNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQ 141

Query: 61  VVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQ 98
           +VNIPSFMVRV+SQKH+DFSLTSP GGGRPGRVKR+N+
Sbjct: 142 LVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNE 179


>AT5G15200.1 | Symbols:  | Ribosomal protein S4 |
           chr5:4935124-4936334 REVERSE LENGTH=198
          Length = 198

 Score =  186 bits (473), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/106 (83%), Positives = 97/106 (91%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQ 60
           M RYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+Q
Sbjct: 82  MNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQ 141

Query: 61  VVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQXXXXXXXS 106
           +VNIPSFMVR+DSQKHIDF+LTSP GGGRPGRVKR+N+       S
Sbjct: 142 LVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKAS 187


>AT5G15200.2 | Symbols:  | Ribosomal protein S4 |
           chr5:4935602-4936334 REVERSE LENGTH=156
          Length = 156

 Score =  108 bits (270), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 55/56 (98%)

Query: 1   MFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIR 56
           M RYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIR
Sbjct: 82  MNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIR 137