Miyakogusa Predicted Gene

Lj0g3v0080799.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080799.1 CUFF.4159.1
         (972 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymer...  1098   0.0  
AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase...   701   0.0  
AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA poly...   544   e-154
AT2G19930.1 | Symbols:  | RNA-dependent RNA polymerase family pr...   113   6e-25
AT2G19910.1 | Symbols:  | RNA-dependent RNA polymerase family pr...    95   2e-19
AT2G19920.1 | Symbols:  | RNA-dependent RNA polymerase family pr...    94   4e-19

>AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1
            | chr1:5094317-5097817 REVERSE LENGTH=1107
          Length = 1107

 Score = 1098 bits (2841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/977 (55%), Positives = 703/977 (71%), Gaps = 40/977 (4%)

Query: 1    MYIFFHYLSTDYKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYEKVNSR------ 54
            ++  F +   DY+L++S E+I +I+LH   G ++K L+ Q+ GAP+I+EK +        
Sbjct: 133  LHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFG 192

Query: 55   -SKYFKEPYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYE--VDNIL 111
               ++ +  +  W R  DFT+S CIGQS+A C +LP    +P+FR ++ NY E    + L
Sbjct: 193  IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 252

Query: 112  TPERHLGFSSNLN-FVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPK 170
              E    +SSN N  VP+V PP GF+LP++ILFK+N+LVQ+  L   A+D + + +++ K
Sbjct: 253  I-ESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQK 311

Query: 171  RIKVEYIESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQ 230
            +     I+  L KL+ + ECCYEP  WL  +Y+++    +LP+S  ISLDDGLVY++RVQ
Sbjct: 312  KYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQ 371

Query: 231  VTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLM-FTGVKRETKL 289
            VTP+R+YF GPEVN+SNRVLR+Y +  +NFLRVSFVDED++K+ S DL   +  +R TKL
Sbjct: 372  VTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKL 431

Query: 290  HQRVLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDIRKWMGDFHEIRN 349
            + R+ + L++GI IG+KKFEFLAFSSSQLR++S WMFA  D +TA+ IR WMGDF  IRN
Sbjct: 432  YDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRN 491

Query: 350  VAKYAARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVAR 409
            VAKYAARLGQSFSSSRET++V   EIE+IPD+E       Y FSDGIGKISAE A+ VAR
Sbjct: 492  VAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVAR 551

Query: 410  KCGFRDHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSC 469
            KCG  +  PSAFQIRYGG+KGVVA+DP+S+ KLSLRKSM K++SENTKLDVLAWSK + C
Sbjct: 552  KCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPC 611

Query: 470  FLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPF---KAIDMMSHGDITNMLREM 526
            ++NRQ+I LLSTLGV D VF +KQREVV+++  I   P    +A+ +M+ G+ TN+L+ +
Sbjct: 612  YMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKAL 671

Query: 527  LIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQ 586
            ++ G+ P  EPFLSMMLQ   ASKL EL+ KTRIF+  GR+M+GCLDETRTL YGQV VQ
Sbjct: 672  ILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQ 731

Query: 587  ISLPRNNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDC 646
             S P                  ++++ G V+VAKNPCLHPGDVR+L+AV++P+L+HMVDC
Sbjct: 732  YSDPMR-------------PGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDC 778

Query: 647  VVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDH--EPSQVMNVNLDHDV 704
            VVFPQKG RPHPNECSGSDLDGDIYFVCWD  L+PP    PMD+  EP+Q+    LDHDV
Sbjct: 779  VVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQI----LDHDV 834

Query: 705  TLQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVP 764
            T+++VEE+F +YIV D+LG+IA+AHT FAD EP KA S  CIELAK  S AVDF K+GV 
Sbjct: 835  TIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVA 894

Query: 765  AEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYD 824
            A IPQHL  ++YPDFMEKP KP+Y+SKN+IG+L+REVK  A      K FT  +A + YD
Sbjct: 895  AVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYD 954

Query: 825  HDMEVDGFDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLE 884
             DMEVDGF++Y   AF  K  YD KL NLM+YYGI+TEAEI+SG I++MSKSF +R+D E
Sbjct: 955  KDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAE 1014

Query: 885  GVNHAVISLRNEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGLNKNH 944
             +  AV +LR E    FN    +            ASAWYHVTYH  YWG YNEGLN++H
Sbjct: 1015 SIGRAVRALRKETLSLFNASEEEENESAK------ASAWYHVTYHSSYWGLYNEGLNRDH 1068

Query: 945  LLSFPWCVHDTLIRIKK 961
             LSF WCV+D L+RIKK
Sbjct: 1069 FLSFAWCVYDKLVRIKK 1085


>AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 |
            chr4:6780522-6784390 FORWARD LENGTH=1133
          Length = 1133

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1003 (40%), Positives = 593/1003 (59%), Gaps = 55/1003 (5%)

Query: 4    FFHYLSTD-YKLQISSESISRIELHQSHGFTNKL--LLFQLRGAPQIYEKV--------- 51
            F+ + S D YK+++  E I        +G  +++   L +L+  P+++++V         
Sbjct: 145  FWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVTVHIATKFK 204

Query: 52   NSRSKYFKEPYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNIL 111
            + R ++ KE ++  W R  DF+ S  IG S+  C ++   + + +       Y E    L
Sbjct: 205  SDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSL 264

Query: 112  TPERHLGFSSNLNFVPMV-IPPEGFNLPYKILFKINSLVQ-HGLLPFLAIDTNLFHMVDP 169
            T      F+S    VP++     G   PY+ILF++N+LV    +  F A D  L  ++  
Sbjct: 265  TYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAASDMELIKIL-- 322

Query: 170  KRIKVEYIESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQ-LPVSCAISL-DDGLVYVH 227
            + + +E     L KL+Q    CY+PV +++ Q Q   +  +  P S    L +  ++   
Sbjct: 323  RGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQ 382

Query: 228  RVQVTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKL-------HSADLMF 280
            R  VTPS+IY  GPE+  +N V++N+ +   +F+RV+FV+ED  KL       +S +  F
Sbjct: 383  RAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYF 442

Query: 281  TGVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDIRKW 340
                R T ++ RVL+ L  GIT+G K+FEFLAFS+SQLR +SVWMFAS + + A DIR+W
Sbjct: 443  VKPSR-TNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREW 501

Query: 341  MGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKIS 400
            MG F +IR+++K AAR+GQ FS+SR+T+ V   ++E IPDIE      +YCFSDGIGKIS
Sbjct: 502  MGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKIS 561

Query: 401  AELAQIVARKCGFRDHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDV 460
               A+ VA+KCG   HVPSAFQIRYGG+KGV+A+D SS  KLSLR SM K+ S N  L+V
Sbjct: 562  LAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNV 620

Query: 461  LAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPFKAIDM---MSHG 517
              W++   CFLNR+II LLSTLG++D +F   Q   ++ +  +      A+++   +S  
Sbjct: 621  TRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGE 680

Query: 518  DITNMLREMLIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRT 577
            +  N+L +ML+ G+ P+ EP+LSMML+    S+L EL+ + RI V KGR ++GC+DE   
Sbjct: 681  NSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGI 740

Query: 578  LNYGQVFVQISLPRNNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDL 637
            L YGQV+V+++L +  + S   S     ++   VV GKV+V KNPCLHPGD+R+L A+  
Sbjct: 741  LEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYE 800

Query: 638  PSLHH--MVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQV 695
                    +DC++FPQKG RPHPNECSG DLDGD +FV WD  +IP   + PMD+  S+ 
Sbjct: 801  VHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRP 860

Query: 696  MNVNLDHDVTLQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIA 755
                +DHDVTL+++ + F  Y++ DTLGVI++AH V AD +P+KA S  C+ELA LHS A
Sbjct: 861  R--LMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRA 918

Query: 756  VDFAKSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFT 815
            VDFAK+G PAE+P  L+P ++PDF+E+  KP+Y S+++ G+LYR VK+   Q+  +    
Sbjct: 919  VDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKSSLAQRKPEAESE 978

Query: 816  RKMAMQLYDHDMEVDGFDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSK 875
              +A   YD  +E  GF+ +   A  +++MY  KL +LM YYG   E EI++G ILK  +
Sbjct: 979  DTVA---YDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTG-ILKTKE 1034

Query: 876  SFNERKDL------EGVNHAVISLRNEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYH 929
             +  R +       + +  +V  L  EA  WF +       + +     +ASAWY+VTY+
Sbjct: 1035 MYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSC-----EDEQQKKKLASAWYYVTYN 1089

Query: 930  HGYWGCYNEGLNKNHLLSFPWCVHDTLIRIKKGKVSSGTYEIK 972
                   N    K   LSFPW V D L+ IK       + E K
Sbjct: 1090 P------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQSVEEK 1126


>AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA
            polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196
          Length = 1196

 Score =  544 bits (1401), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 363/1003 (36%), Positives = 544/1003 (54%), Gaps = 71/1003 (7%)

Query: 8    LSTDYKLQISSESISRIELHQS-HGFTNKLLLFQLRGAPQIYEKVNSRSKYFKEP----- 61
            ++ DYKL++    I  +  +++ HGF   +L+ QL  +P+++ +      Y   P     
Sbjct: 189  INCDYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDLLD 245

Query: 62   YNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGFSS 121
             ++ W R  DFT    IG+  +  +++  + +  N      +Y+ +  +   E  + +  
Sbjct: 246  DDDPWIRTTDFTQVGAIGRCHS--YRVLISPRYENKLRTALDYFRMRRV--QEERVRWPP 301

Query: 122  NLNFVPMVIPP-----------EGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMV--D 168
             +   P    P           EG +  ++I+F +NS++  G+     +    F ++   
Sbjct: 302  RIRNEPCFGEPVSDHFFCIHHKEGIS--FEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQ 359

Query: 169  PKRIKVEYIESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHR 228
            PK + +    ++L  L   K   ++  + L+   +   +N +L  S   S D  +  + R
Sbjct: 360  PKDVNI----ASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRR 413

Query: 229  VQVTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHS-----------AD 277
            + +TP+R Y   PEV LSNRVLR Y    + FLRV+F+DE M  ++S            D
Sbjct: 414  LVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKD 473

Query: 278  LMFTGVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDI 337
            L  +   ++T + +RV + L +G  +  +K+ FLAFS++QLRD S W FA       SDI
Sbjct: 474  LTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDI 533

Query: 338  RKWMGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEM-IPDIEFRRGEVNYCFSDGI 396
            + WMG F + +NVAK AAR+G  FSS+  TV V  HE++  +PDIE R G   Y FSDGI
Sbjct: 534  KTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE-RNG---YVFSDGI 588

Query: 397  GKISAELAQIVARKCGFRDHV-PSAFQIRYGGFKGVVAIDPSSA--IKLSLRKSMCKYKS 453
            G I+ +LA  V  K     H  P A+QIRY GFKGVVA  PS +  I+L+LR SM K+ S
Sbjct: 589  GTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFS 648

Query: 454  ENTKLDVLAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPFKAIDM 513
            ++T L++ +W++ +  FLNRQII LLS LGV D +F   Q  ++ ++  I      A ++
Sbjct: 649  KHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEV 708

Query: 514  M--SHGDITNMLREMLIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGC 571
            +  S  +  N    ML  GF P  EP L  ML ++  ++L  L+ K+RIFV  GR ++GC
Sbjct: 709  LTASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGC 768

Query: 572  LDETRTLNYGQVFVQISLPR-NNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVR 630
            LDE   L +GQ F+Q+S P   N  S   S+         VVKG V +AKNPCLHPGDVR
Sbjct: 769  LDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVR 828

Query: 631  ILRAVDLPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDH 690
            IL AVD+P LHHM DC++FPQKG RPH NE SGSDLDGD+YFV WD  LIPP++++    
Sbjct: 829  ILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAM 888

Query: 691  EPSQVMNVNLDHDVTLQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAK 750
                    +L   V  QD+ + F   +  + LG I +AH V AD     AM   C+ LA+
Sbjct: 889  HYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAE 948

Query: 751  LHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQ--K 808
            L + AVDF K+G    +P HL+P+ YPDFM K    +Y+S  I+G+LYR VK V  +  +
Sbjct: 949  LAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAE 1008

Query: 809  SLKKRFTRKMAMQLYDHDMEVDGFDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISG 868
            +  +  T   A+  YD  +E+ GF+     A+ +K +YD +L  L+  Y ++ E EI++G
Sbjct: 1009 ASSEESTDPSAIP-YDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTG 1067

Query: 869  NILKMSKSFNERKD--LEGVNHAVISLRNEARRWFNEMVMKSYSQGDDDACAI----ASA 922
            +I  M K  ++++    E + H+  SL+ E R+ F E +    +  +++   +    ASA
Sbjct: 1068 HIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASA 1127

Query: 923  WYHVTYHHGYWGCYNEGLNKNH-----LLSFPWCVHDTLIRIK 960
            WYHVTYH  +     E  + +      +LSF W   D L RIK
Sbjct: 1128 WYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170


>AT2G19930.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8607533-8612441 REVERSE LENGTH=977
          Length = 977

 Score =  113 bits (283), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 161/679 (23%), Positives = 268/679 (39%), Gaps = 135/679 (19%)

Query: 220 DDGLVYVHRVQVTPSRIY-------FCGPEVNLSNRVLRNYPQDTDNFLRVSFVD-EDMD 271
           D G  + ++  V P+  Y         GP +  +   L     D DN L V F D +   
Sbjct: 198 DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGD-DNVLTVKFADVQKSS 256

Query: 272 KLHSADLMFT--GVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQ------------ 317
             +S D  FT  G+              KNGI IG ++++F  F                
Sbjct: 257 STYSIDHYFTYKGIA-------------KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKK 303

Query: 318 -----LRDSSVWMFASRD-----GLTASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRET 367
                +R  S   +  ++     G +  + R      H    +A Y AR     S ++ T
Sbjct: 304 VKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK-T 362

Query: 368 VSVGRHEI--EMIPDIE---------FRRGEVNYCFSDGIGKISAELAQ-----IVARKC 411
           + V    I  + I DI            + +     SDG G IS +LA+     I   KC
Sbjct: 363 LEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKC 422

Query: 412 GFRDHVPSA----------FQIRYGGF--KGV-----------VAIDPSSAIKLSLRKSM 448
              + +  A          F++ Y G+  KG            V + PS  IK+S   S+
Sbjct: 423 LRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPS-MIKVSKDPSL 481

Query: 449 CKYKSENTKLDVLAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPF 508
             + + N    V   +  K   L++ ++ LLS  G+ +  F       + + K I     
Sbjct: 482 SNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKR 541

Query: 509 KAIDM-MSHGDITNMLREMLIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRA 567
            A++  +++G++ +     +I    P  EP L   L  L  ++  +L+   ++ V +   
Sbjct: 542 AALNAALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKTEKNDLK-AGKLPVTESYY 600

Query: 568 MLGCLDETRTLNYGQVFVQISLPRNNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPG 627
           ++G +D T  L   +V V +   +                    + G+V+V +NP LH G
Sbjct: 601 LMGTVDPTGALKEDEVCVILESGQ--------------------ISGEVLVYRNPGLHFG 640

Query: 628 DVRILRAVDLPSLHHMVD----CVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLI--- 680
           D+ IL+A  + +L   V      V FPQKG R   +E +G D DGD+YF+  +P L+   
Sbjct: 641 DIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENF 700

Query: 681 ----------PPHQENPMDHEPSQVMNVNLDHDVTLQDVEEHFTHY----IVKDTLGVIA 726
                     PP + N     PSQ+    L+ ++    +   F       I  D+   I 
Sbjct: 701 KPSEPWVSLTPPSKSNS-GRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIM 759

Query: 727 SAHTVFAD--TEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPH 784
               +  D   E K  M    +EL  ++  A+D  K G    +P  L+P+ +P +ME+  
Sbjct: 760 DRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDK 819

Query: 785 KPSYQSKNIIGQLYREVKN 803
           K  +QS +I+G ++  VK+
Sbjct: 820 K--FQSTSILGLIFDFVKS 836


>AT2G19910.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8595820-8600757 REVERSE LENGTH=992
          Length = 992

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 195/471 (41%), Gaps = 88/471 (18%)

Query: 393 SDGIGKISAELAQ----------------IVARKCGFRDHVPSA--------FQIRYGGF 428
           SDG G IS +LA+                I ++   F    P          F+I Y G+
Sbjct: 403 SDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGY 462

Query: 429 --KGV-----------VAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQI 475
             KG            V + PS  IK+   +++    + N+   V   +  +   L+R +
Sbjct: 463 AVKGTFLTNKKLPPRTVQVRPS-MIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNL 521

Query: 476 IILLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGFH 532
           + LLS  GV +  F    R  + + K I    R  FKA   +++GD      +M++ G  
Sbjct: 522 VALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKA--AINYGD-DQYTADMILVGI- 577

Query: 533 PTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRN 592
           P  EP+L   L  L  ++   L+   R  + +   ++G +D T  L   ++ V +   + 
Sbjct: 578 PLDEPYLKDRLSYLLKTERNALK-AGRFPIDESYYIMGTVDPTGELKENEICVILHSGQ- 635

Query: 593 NVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVD----CVV 648
                              + G V+V +NP LH GD+ +L+A  + +L   V      V 
Sbjct: 636 -------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVF 676

Query: 649 FPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIP---PHQENPMDHEPSQVM-NVNLDHDV 704
           FPQKG R   +E +G D DGD+YF+  +P L+    P +      +PS++          
Sbjct: 677 FPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELS 736

Query: 705 TLQDVEEHFTHYI-----VKDTLGVIASAHTVFAD---------TEPKKAMSSSCIELAK 750
             +  EE F  ++      +D +G+ A       D          + K     + ++L  
Sbjct: 737 EEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLID 796

Query: 751 LHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREV 801
           ++  A+D  K G   ++P  L  + +P +ME+  K  ++S +I+G ++  V
Sbjct: 797 IYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTV 847


>AT2G19920.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8602222-8606887 REVERSE LENGTH=927
          Length = 927

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 154/641 (24%), Positives = 263/641 (41%), Gaps = 134/641 (20%)

Query: 298 KNGITIGNKKFEFLAF-----SSSQLRDSS--VWMFASRDGLTAS--------------- 335
           KNGI +G ++++F  F     +  + R+S+  V  +  R G TAS               
Sbjct: 276 KNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYILSGMSIH 335

Query: 336 DIRKWMGDFHEIRNVAKYAARLGQSFSSSRE-TVSVGRHEIEMIPDIEFRRGEVNYCF-- 392
           + R      H + + A Y AR     S +++  V +    +  I DI       N     
Sbjct: 336 EARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDK 395

Query: 393 -------SDGIGKISAELAQI----VARKCGFRDH---------VPSAFQIRY----GGF 428
                  SDG G IS +LA++    + +    R +          P   QIR        
Sbjct: 396 NGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIRMFNDGSAV 455

Query: 429 KGVVAID---PSSAIKLSLRKSMCK-YKSEN-------TKLDVLAWSKQ-KSCFLNRQII 476
           KG+  ++   P   +++  R SM K YK +N         L+V+  S   K   L++ ++
Sbjct: 456 KGIFLLNKNLPPQTVQV--RPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLV 513

Query: 477 ILLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGFHP 533
            LLS  GV +  F       + + K I    R   KA     + D  N L +M++ G  P
Sbjct: 514 ALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMIMAGI-P 571

Query: 534 TKEPFLSMMLQTLCASKLQELQLKT-RIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRN 592
             EP+L   L  L   KL++  LK  ++ + +   ++G +D T  L   +V         
Sbjct: 572 LDEPYLKHYLSKLL--KLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEV--------- 620

Query: 593 NVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVD----CVV 648
                     +G  KS+      V+V +NP LH GD+ IL+A  + SL   V      V 
Sbjct: 621 ----------SGLAKSQ-----DVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVF 665

Query: 649 FPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQ--ENPMDHEP-SQVMNVNLDHDVT 705
           FPQKG R   +E +G D DGD+YF+  +P L+  ++  E  +   P S++       +++
Sbjct: 666 FPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELS 725

Query: 706 LQDVEEHF------THYIVKDTLGVIASAHTVFAD---------TEPKKAMSSSCIELAK 750
            + +EE        T +     +G  A +     D          + K  M    ++L  
Sbjct: 726 PEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTD 785

Query: 751 LHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSL 810
           ++  A+D  K+G    +P  ++ + +P +ME+    +++S +I+G ++  V     + + 
Sbjct: 786 IYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER--NKTFKSTSILGLIFDTVDFHNAEDTT 843

Query: 811 KKRFTRKMAMQLYDHDMEVDGFDKYTTIAFEYKNMYDCKLW 851
               ++   +Q ++ D  V  FD           M  CKLW
Sbjct: 844 PSGISK---LQCFE-DEPVSEFD-----------MEKCKLW 869