Miyakogusa Predicted Gene
- Lj0g3v0080799.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0080799.1 CUFF.4159.1
(972 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymer... 1098 0.0
AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase... 701 0.0
AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA poly... 544 e-154
AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family pr... 113 6e-25
AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family pr... 95 2e-19
AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family pr... 94 4e-19
>AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1
| chr1:5094317-5097817 REVERSE LENGTH=1107
Length = 1107
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/977 (55%), Positives = 703/977 (71%), Gaps = 40/977 (4%)
Query: 1 MYIFFHYLSTDYKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYEKVNSR------ 54
++ F + DY+L++S E+I +I+LH G ++K L+ Q+ GAP+I+EK +
Sbjct: 133 LHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFG 192
Query: 55 -SKYFKEPYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYE--VDNIL 111
++ + + W R DFT+S CIGQS+A C +LP +P+FR ++ NY E + L
Sbjct: 193 IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFL 252
Query: 112 TPERHLGFSSNLN-FVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPK 170
E +SSN N VP+V PP GF+LP++ILFK+N+LVQ+ L A+D + + +++ K
Sbjct: 253 I-ESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQK 311
Query: 171 RIKVEYIESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQ 230
+ I+ L KL+ + ECCYEP WL +Y+++ +LP+S ISLDDGLVY++RVQ
Sbjct: 312 KYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQ 371
Query: 231 VTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLM-FTGVKRETKL 289
VTP+R+YF GPEVN+SNRVLR+Y + +NFLRVSFVDED++K+ S DL + +R TKL
Sbjct: 372 VTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKL 431
Query: 290 HQRVLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDIRKWMGDFHEIRN 349
+ R+ + L++GI IG+KKFEFLAFSSSQLR++S WMFA D +TA+ IR WMGDF IRN
Sbjct: 432 YDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRN 491
Query: 350 VAKYAARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVAR 409
VAKYAARLGQSFSSSRET++V EIE+IPD+E Y FSDGIGKISAE A+ VAR
Sbjct: 492 VAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVAR 551
Query: 410 KCGFRDHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSC 469
KCG + PSAFQIRYGG+KGVVA+DP+S+ KLSLRKSM K++SENTKLDVLAWSK + C
Sbjct: 552 KCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPC 611
Query: 470 FLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPF---KAIDMMSHGDITNMLREM 526
++NRQ+I LLSTLGV D VF +KQREVV+++ I P +A+ +M+ G+ TN+L+ +
Sbjct: 612 YMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKAL 671
Query: 527 LIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQ 586
++ G+ P EPFLSMMLQ ASKL EL+ KTRIF+ GR+M+GCLDETRTL YGQV VQ
Sbjct: 672 ILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQ 731
Query: 587 ISLPRNNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDC 646
S P ++++ G V+VAKNPCLHPGDVR+L+AV++P+L+HMVDC
Sbjct: 732 YSDPMR-------------PGRRFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDC 778
Query: 647 VVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDH--EPSQVMNVNLDHDV 704
VVFPQKG RPHPNECSGSDLDGDIYFVCWD L+PP PMD+ EP+Q+ LDHDV
Sbjct: 779 VVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQI----LDHDV 834
Query: 705 TLQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIAVDFAKSGVP 764
T+++VEE+F +YIV D+LG+IA+AHT FAD EP KA S CIELAK S AVDF K+GV
Sbjct: 835 TIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVA 894
Query: 765 AEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFTRKMAMQLYD 824
A IPQHL ++YPDFMEKP KP+Y+SKN+IG+L+REVK A K FT +A + YD
Sbjct: 895 AVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYD 954
Query: 825 HDMEVDGFDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSKSFNERKDLE 884
DMEVDGF++Y AF K YD KL NLM+YYGI+TEAEI+SG I++MSKSF +R+D E
Sbjct: 955 KDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAE 1014
Query: 885 GVNHAVISLRNEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYHHGYWGCYNEGLNKNH 944
+ AV +LR E FN + ASAWYHVTYH YWG YNEGLN++H
Sbjct: 1015 SIGRAVRALRKETLSLFNASEEEENESAK------ASAWYHVTYHSSYWGLYNEGLNRDH 1068
Query: 945 LLSFPWCVHDTLIRIKK 961
LSF WCV+D L+RIKK
Sbjct: 1069 FLSFAWCVYDKLVRIKK 1085
>AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 |
chr4:6780522-6784390 FORWARD LENGTH=1133
Length = 1133
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/1003 (40%), Positives = 593/1003 (59%), Gaps = 55/1003 (5%)
Query: 4 FFHYLSTD-YKLQISSESISRIELHQSHGFTNKL--LLFQLRGAPQIYEKV--------- 51
F+ + S D YK+++ E I +G +++ L +L+ P+++++V
Sbjct: 145 FWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVTVHIATKFK 204
Query: 52 NSRSKYFKEPYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNIL 111
+ R ++ KE ++ W R DF+ S IG S+ C ++ + + + Y E L
Sbjct: 205 SDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPYYREDTLSL 264
Query: 112 TPERHLGFSSNLNFVPMV-IPPEGFNLPYKILFKINSLVQ-HGLLPFLAIDTNLFHMVDP 169
T F+S VP++ G PY+ILF++N+LV + F A D L ++
Sbjct: 265 TYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAASDMELIKIL-- 322
Query: 170 KRIKVEYIESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQ-LPVSCAISL-DDGLVYVH 227
+ + +E L KL+Q CY+PV +++ Q Q + + P S L + ++
Sbjct: 323 RGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQ 382
Query: 228 RVQVTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKL-------HSADLMF 280
R VTPS+IY GPE+ +N V++N+ + +F+RV+FV+ED KL +S + F
Sbjct: 383 RAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYF 442
Query: 281 TGVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDIRKW 340
R T ++ RVL+ L GIT+G K+FEFLAFS+SQLR +SVWMFAS + + A DIR+W
Sbjct: 443 VKPSR-TNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREW 501
Query: 341 MGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKIS 400
MG F +IR+++K AAR+GQ FS+SR+T+ V ++E IPDIE +YCFSDGIGKIS
Sbjct: 502 MGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKIS 561
Query: 401 AELAQIVARKCGFRDHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDV 460
A+ VA+KCG HVPSAFQIRYGG+KGV+A+D SS KLSLR SM K+ S N L+V
Sbjct: 562 LAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNV 620
Query: 461 LAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPFKAIDM---MSHG 517
W++ CFLNR+II LLSTLG++D +F Q ++ + + A+++ +S
Sbjct: 621 TRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGE 680
Query: 518 DITNMLREMLIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRT 577
+ N+L +ML+ G+ P+ EP+LSMML+ S+L EL+ + RI V KGR ++GC+DE
Sbjct: 681 NSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGI 740
Query: 578 LNYGQVFVQISLPRNNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDL 637
L YGQV+V+++L + + S S ++ VV GKV+V KNPCLHPGD+R+L A+
Sbjct: 741 LEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYE 800
Query: 638 PSLHH--MVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQV 695
+DC++FPQKG RPHPNECSG DLDGD +FV WD +IP + PMD+ S+
Sbjct: 801 VHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRP 860
Query: 696 MNVNLDHDVTLQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAKLHSIA 755
+DHDVTL+++ + F Y++ DTLGVI++AH V AD +P+KA S C+ELA LHS A
Sbjct: 861 R--LMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRA 918
Query: 756 VDFAKSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSLKKRFT 815
VDFAK+G PAE+P L+P ++PDF+E+ KP+Y S+++ G+LYR VK+ Q+ +
Sbjct: 919 VDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKSSLAQRKPEAESE 978
Query: 816 RKMAMQLYDHDMEVDGFDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISGNILKMSK 875
+A YD +E GF+ + A +++MY KL +LM YYG E EI++G ILK +
Sbjct: 979 DTVA---YDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEILTG-ILKTKE 1034
Query: 876 SFNERKDL------EGVNHAVISLRNEARRWFNEMVMKSYSQGDDDACAIASAWYHVTYH 929
+ R + + + +V L EA WF + + + +ASAWY+VTY+
Sbjct: 1035 MYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSC-----EDEQQKKKLASAWYYVTYN 1089
Query: 930 HGYWGCYNEGLNKNHLLSFPWCVHDTLIRIKKGKVSSGTYEIK 972
N K LSFPW V D L+ IK + E K
Sbjct: 1090 P------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQSVEEK 1126
>AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA
polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196
Length = 1196
Score = 544 bits (1401), Expect = e-154, Method: Compositional matrix adjust.
Identities = 363/1003 (36%), Positives = 544/1003 (54%), Gaps = 71/1003 (7%)
Query: 8 LSTDYKLQISSESISRIELHQS-HGFTNKLLLFQLRGAPQIYEKVNSRSKYFKEP----- 61
++ DYKL++ I + +++ HGF +L+ QL +P+++ + Y P
Sbjct: 189 INCDYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDLLD 245
Query: 62 YNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGFSS 121
++ W R DFT IG+ + +++ + + N +Y+ + + E + +
Sbjct: 246 DDDPWIRTTDFTQVGAIGRCHS--YRVLISPRYENKLRTALDYFRMRRV--QEERVRWPP 301
Query: 122 NLNFVPMVIPP-----------EGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMV--D 168
+ P P EG + ++I+F +NS++ G+ + F ++
Sbjct: 302 RIRNEPCFGEPVSDHFFCIHHKEGIS--FEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQ 359
Query: 169 PKRIKVEYIESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHR 228
PK + + ++L L K ++ + L+ + +N +L S S D + + R
Sbjct: 360 PKDVNI----ASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRR 413
Query: 229 VQVTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHS-----------AD 277
+ +TP+R Y PEV LSNRVLR Y + FLRV+F+DE M ++S D
Sbjct: 414 LVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKD 473
Query: 278 LMFTGVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDI 337
L + ++T + +RV + L +G + +K+ FLAFS++QLRD S W FA SDI
Sbjct: 474 LTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDI 533
Query: 338 RKWMGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEM-IPDIEFRRGEVNYCFSDGI 396
+ WMG F + +NVAK AAR+G FSS+ TV V HE++ +PDIE R G Y FSDGI
Sbjct: 534 KTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE-RNG---YVFSDGI 588
Query: 397 GKISAELAQIVARKCGFRDHV-PSAFQIRYGGFKGVVAIDPSSA--IKLSLRKSMCKYKS 453
G I+ +LA V K H P A+QIRY GFKGVVA PS + I+L+LR SM K+ S
Sbjct: 589 GTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFS 648
Query: 454 ENTKLDVLAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPFKAIDM 513
++T L++ +W++ + FLNRQII LLS LGV D +F Q ++ ++ I A ++
Sbjct: 649 KHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEV 708
Query: 514 M--SHGDITNMLREMLIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGC 571
+ S + N ML GF P EP L ML ++ ++L L+ K+RIFV GR ++GC
Sbjct: 709 LTASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGC 768
Query: 572 LDETRTLNYGQVFVQISLPR-NNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVR 630
LDE L +GQ F+Q+S P N S S+ VVKG V +AKNPCLHPGDVR
Sbjct: 769 LDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVR 828
Query: 631 ILRAVDLPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDH 690
IL AVD+P LHHM DC++FPQKG RPH NE SGSDLDGD+YFV WD LIPP++++
Sbjct: 829 ILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAM 888
Query: 691 EPSQVMNVNLDHDVTLQDVEEHFTHYIVKDTLGVIASAHTVFADTEPKKAMSSSCIELAK 750
+L V QD+ + F + + LG I +AH V AD AM C+ LA+
Sbjct: 889 HYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAE 948
Query: 751 LHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQ--K 808
L + AVDF K+G +P HL+P+ YPDFM K +Y+S I+G+LYR VK V + +
Sbjct: 949 LAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAE 1008
Query: 809 SLKKRFTRKMAMQLYDHDMEVDGFDKYTTIAFEYKNMYDCKLWNLMEYYGIETEAEIISG 868
+ + T A+ YD +E+ GF+ A+ +K +YD +L L+ Y ++ E EI++G
Sbjct: 1009 ASSEESTDPSAIP-YDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTG 1067
Query: 869 NILKMSKSFNERKD--LEGVNHAVISLRNEARRWFNEMVMKSYSQGDDDACAI----ASA 922
+I M K ++++ E + H+ SL+ E R+ F E + + +++ + ASA
Sbjct: 1068 HIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASA 1127
Query: 923 WYHVTYHHGYWGCYNEGLNKNH-----LLSFPWCVHDTLIRIK 960
WYHVTYH + E + + +LSF W D L RIK
Sbjct: 1128 WYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIK 1170
>AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8607533-8612441 REVERSE LENGTH=977
Length = 977
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 161/679 (23%), Positives = 268/679 (39%), Gaps = 135/679 (19%)
Query: 220 DDGLVYVHRVQVTPSRIY-------FCGPEVNLSNRVLRNYPQDTDNFLRVSFVD-EDMD 271
D G + ++ V P+ Y GP + + L D DN L V F D +
Sbjct: 198 DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGD-DNVLTVKFADVQKSS 256
Query: 272 KLHSADLMFT--GVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQ------------ 317
+S D FT G+ KNGI IG ++++F F
Sbjct: 257 STYSIDHYFTYKGIA-------------KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKK 303
Query: 318 -----LRDSSVWMFASRD-----GLTASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRET 367
+R S + ++ G + + R H +A Y AR S ++ T
Sbjct: 304 VKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK-T 362
Query: 368 VSVGRHEI--EMIPDIE---------FRRGEVNYCFSDGIGKISAELAQ-----IVARKC 411
+ V I + I DI + + SDG G IS +LA+ I KC
Sbjct: 363 LEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKC 422
Query: 412 GFRDHVPSA----------FQIRYGGF--KGV-----------VAIDPSSAIKLSLRKSM 448
+ + A F++ Y G+ KG V + PS IK+S S+
Sbjct: 423 LRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPS-MIKVSKDPSL 481
Query: 449 CKYKSENTKLDVLAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPF 508
+ + N V + K L++ ++ LLS G+ + F + + K I
Sbjct: 482 SNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKR 541
Query: 509 KAIDM-MSHGDITNMLREMLIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRA 567
A++ +++G++ + +I P EP L L L ++ +L+ ++ V +
Sbjct: 542 AALNAALNYGEMDDQNAAQMILVGIPLDEPHLKNYLSILLKTEKNDLK-AGKLPVTESYY 600
Query: 568 MLGCLDETRTLNYGQVFVQISLPRNNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPG 627
++G +D T L +V V + + + G+V+V +NP LH G
Sbjct: 601 LMGTVDPTGALKEDEVCVILESGQ--------------------ISGEVLVYRNPGLHFG 640
Query: 628 DVRILRAVDLPSLHHMVD----CVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLI--- 680
D+ IL+A + +L V V FPQKG R +E +G D DGD+YF+ +P L+
Sbjct: 641 DIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENF 700
Query: 681 ----------PPHQENPMDHEPSQVMNVNLDHDVTLQDVEEHFTHY----IVKDTLGVIA 726
PP + N PSQ+ L+ ++ + F I D+ I
Sbjct: 701 KPSEPWVSLTPPSKSNS-GRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIM 759
Query: 727 SAHTVFAD--TEPKKAMSSSCIELAKLHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPH 784
+ D E K M +EL ++ A+D K G +P L+P+ +P +ME+
Sbjct: 760 DRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDK 819
Query: 785 KPSYQSKNIIGQLYREVKN 803
K +QS +I+G ++ VK+
Sbjct: 820 K--FQSTSILGLIFDFVKS 836
>AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8595820-8600757 REVERSE LENGTH=992
Length = 992
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/471 (23%), Positives = 195/471 (41%), Gaps = 88/471 (18%)
Query: 393 SDGIGKISAELAQ----------------IVARKCGFRDHVPSA--------FQIRYGGF 428
SDG G IS +LA+ I ++ F P F+I Y G+
Sbjct: 403 SDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGY 462
Query: 429 --KGV-----------VAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQI 475
KG V + PS IK+ +++ + N+ V + + L+R +
Sbjct: 463 AVKGTFLTNKKLPPRTVQVRPS-MIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNL 521
Query: 476 IILLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGFH 532
+ LLS GV + F R + + K I R FKA +++GD +M++ G
Sbjct: 522 VALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKA--AINYGD-DQYTADMILVGI- 577
Query: 533 PTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRN 592
P EP+L L L ++ L+ R + + ++G +D T L ++ V + +
Sbjct: 578 PLDEPYLKDRLSYLLKTERNALK-AGRFPIDESYYIMGTVDPTGELKENEICVILHSGQ- 635
Query: 593 NVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVD----CVV 648
+ G V+V +NP LH GD+ +L+A + +L V V
Sbjct: 636 -------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVF 676
Query: 649 FPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIP---PHQENPMDHEPSQVM-NVNLDHDV 704
FPQKG R +E +G D DGD+YF+ +P L+ P + +PS++
Sbjct: 677 FPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELS 736
Query: 705 TLQDVEEHFTHYI-----VKDTLGVIASAHTVFAD---------TEPKKAMSSSCIELAK 750
+ EE F ++ +D +G+ A D + K + ++L
Sbjct: 737 EEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLID 796
Query: 751 LHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREV 801
++ A+D K G ++P L + +P +ME+ K ++S +I+G ++ V
Sbjct: 797 IYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTV 847
>AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8602222-8606887 REVERSE LENGTH=927
Length = 927
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 154/641 (24%), Positives = 263/641 (41%), Gaps = 134/641 (20%)
Query: 298 KNGITIGNKKFEFLAF-----SSSQLRDSS--VWMFASRDGLTAS--------------- 335
KNGI +G ++++F F + + R+S+ V + R G TAS
Sbjct: 276 KNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYILSGMSIH 335
Query: 336 DIRKWMGDFHEIRNVAKYAARLGQSFSSSRE-TVSVGRHEIEMIPDIEFRRGEVNYCF-- 392
+ R H + + A Y AR S +++ V + + I DI N
Sbjct: 336 EARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDK 395
Query: 393 -------SDGIGKISAELAQI----VARKCGFRDH---------VPSAFQIRY----GGF 428
SDG G IS +LA++ + + R + P QIR
Sbjct: 396 NGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIRMFNDGSAV 455
Query: 429 KGVVAID---PSSAIKLSLRKSMCK-YKSEN-------TKLDVLAWSKQ-KSCFLNRQII 476
KG+ ++ P +++ R SM K YK +N L+V+ S K L++ ++
Sbjct: 456 KGIFLLNKNLPPQTVQV--RPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLV 513
Query: 477 ILLSTLGVKDRVFRRKQREVVNQIKMI---SRKPFKAIDMMSHGDITNMLREMLIYGFHP 533
LLS GV + F + + K I R KA + D N L +M++ G P
Sbjct: 514 ALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMIMAGI-P 571
Query: 534 TKEPFLSMMLQTLCASKLQELQLKT-RIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRN 592
EP+L L L KL++ LK ++ + + ++G +D T L +V
Sbjct: 572 LDEPYLKHYLSKLL--KLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEV--------- 620
Query: 593 NVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVD----CVV 648
+G KS+ V+V +NP LH GD+ IL+A + SL V V
Sbjct: 621 ----------SGLAKSQ-----DVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVF 665
Query: 649 FPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQ--ENPMDHEP-SQVMNVNLDHDVT 705
FPQKG R +E +G D DGD+YF+ +P L+ ++ E + P S++ +++
Sbjct: 666 FPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELS 725
Query: 706 LQDVEEHF------THYIVKDTLGVIASAHTVFAD---------TEPKKAMSSSCIELAK 750
+ +EE T + +G A + D + K M ++L
Sbjct: 726 PEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTD 785
Query: 751 LHSIAVDFAKSGVPAEIPQHLRPEKYPDFMEKPHKPSYQSKNIIGQLYREVKNVALQKSL 810
++ A+D K+G +P ++ + +P +ME+ +++S +I+G ++ V + +
Sbjct: 786 IYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER--NKTFKSTSILGLIFDTVDFHNAEDTT 843
Query: 811 KKRFTRKMAMQLYDHDMEVDGFDKYTTIAFEYKNMYDCKLW 851
++ +Q ++ D V FD M CKLW
Sbjct: 844 PSGISK---LQCFE-DEPVSEFD-----------MEKCKLW 869