Miyakogusa Predicted Gene

Lj0g3v0080659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080659.1 Non Chatacterized Hit- tr|Q7XB80|Q7XB80_ORYSJ
Putative uncharacterized protein OSJNBa0081K20.21
OS=O,67.14,2e-18,DAP3,Ribosomal protein S23/S29,
mitochondrial,CUFF.4162.1
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16870.1 | Symbols:  | mitochondrial 28S ribosomal protein S2...   109   4e-25

>AT1G16870.1 | Symbols:  | mitochondrial 28S ribosomal protein
           S29-related | chr1:5770964-5773157 REVERSE LENGTH=480
          Length = 480

 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 58/71 (81%)

Query: 2   GMVKEFQDSMRPALLVRQSFLDLRDNFRRIVDPPLWSPPGKGVKARKQVVLDGPVSCGKS 61
           G+  EF +S RPALLVR+S+L LRDNFRRI DPP+W    KGVK +KQ+VLDGPV CGKS
Sbjct: 161 GIEDEFNESWRPALLVRKSYLALRDNFRRIADPPMWPSDSKGVKLQKQIVLDGPVKCGKS 220

Query: 62  IALAMLVQWAR 72
           IALAMLV WAR
Sbjct: 221 IALAMLVHWAR 231