Miyakogusa Predicted Gene

Lj0g3v0080589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080589.1 Non Chatacterized Hit- tr|C3Y3Q4|C3Y3Q4_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,35.81,3e-18,FAMILY NOT NAMED,NULL; DUF2838,Protein of unknown
function DUF2838,gene.g5954.t1.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35460.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   276   8e-75

>AT5G35460.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2838
           (InterPro:IPR021261); Has 1807 Blast hits to 1807
           proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:13672598-13674546 FORWARD LENGTH=381
          Length = 381

 Score =  276 bits (706), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 140/154 (90%)

Query: 28  DFCYYANTIFLVDLLCYPRNEKLFMVCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIH 87
           DFCYYANTIFLVDLL YP+NEKLFMVCFSFAEGPLAWA+IVWRCSLVFSS DKIVSVLIH
Sbjct: 121 DFCYYANTIFLVDLLLYPKNEKLFMVCFSFAEGPLAWAIIVWRCSLVFSSPDKIVSVLIH 180

Query: 88  LLPGIVFFTIRWWNPATFEAMHPEGTARRATWPYVEDKSYLWTWLFLVPLVVYSLWQLLY 147
           LLPG+VFFTIRWWNPATF AMHP GT RR +WPYVEDK+YL+TWLFLVPLVVY+LWQ+LY
Sbjct: 181 LLPGLVFFTIRWWNPATFAAMHPVGTDRRVSWPYVEDKAYLFTWLFLVPLVVYTLWQVLY 240

Query: 148 FLIVNVLRRQRFLRDPEVMNSYRQAILKEKKKSE 181
           FLIVNVLRRQR LRDPEVM SYR+   K +K + 
Sbjct: 241 FLIVNVLRRQRLLRDPEVMTSYRELSKKAEKANN 274