Miyakogusa Predicted Gene

Lj0g3v0080529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080529.1 Non Chatacterized Hit- tr|I3SA50|I3SA50_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.6,0,no
description,NULL; no description,Superoxide dismutase, copper/zinc
binding domain; Sod_Cu,Superox,CUFF.4141.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...   382   e-106
AT1G12520.2 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...   359   1e-99
AT1G12520.3 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | ...   289   1e-78
AT2G28190.1 | Symbols: CSD2, CZSOD2 | copper/zinc superoxide dis...    65   5e-11
AT1G08830.2 | Symbols: CSD1 | copper/zinc superoxide dismutase 1...    57   2e-08
AT1G08830.1 | Symbols: CSD1 | copper/zinc superoxide dismutase 1...    57   2e-08
AT5G18100.1 | Symbols: CSD3 | copper/zinc superoxide dismutase 3...    55   6e-08
AT5G18100.2 | Symbols: CSD3 | copper/zinc superoxide dismutase 3...    55   7e-08
AT3G02960.1 | Symbols:  | Heavy metal transport/detoxification s...    51   8e-07

>AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268900 REVERSE LENGTH=320
          Length = 320

 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/264 (69%), Positives = 221/264 (83%), Gaps = 4/264 (1%)

Query: 57  LVKAFVAPP--SPLRMDTKLSNQTEHVLPELLTEYMVDMKCAGCVNSVKEKLNTIKGVKN 114
           L ++FV+ P  + L  D  L +Q +  +P+LLTE+MVDM C GCVN+VK KL TI+G++ 
Sbjct: 58  LSRSFVSSPMATALTSDRNL-HQEDRAMPQLLTEFMVDMTCEGCVNAVKNKLETIEGIEK 116

Query: 115 VEVDLSNQVVRILGSTPVKTMTEALEQTGRKARLIGQGVPEDFLISAAVSEFKGPNIFGV 174
           VEVDLSNQVVRILGS+PVK MT+ALEQTGRKARLIGQGVP+DFL+SAAV+EFKGP+IFGV
Sbjct: 117 VEVDLSNQVVRILGSSPVKAMTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGV 176

Query: 175 VRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNEENTKEPLGD 234
           VR AQV+MELARIEANF+GLSPG H W INE+GDLT GAASTG ++NP  ++   EPLGD
Sbjct: 177 VRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGTEPLGD 236

Query: 235 LGTLDVDEKGEAFYTGVRENLRVGDLIGRSLVVYATED-KSEHGVAAAVIARSAGVGENY 293
           LGTL+ D+ GEAFY+G +E L+V DLIGR++VVY T+D KS  G+ AAVIARSAGVGENY
Sbjct: 237 LGTLEADKNGEAFYSGKKEKLKVADLIGRAVVVYKTDDNKSGPGLTAAVIARSAGVGENY 296

Query: 294 KKLCTCDGTTIWEASDRDFVTSKV 317
           KKLC+CDGT IWEA++ DFV SKV
Sbjct: 297 KKLCSCDGTVIWEATNSDFVASKV 320


>AT1G12520.2 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268438 REVERSE LENGTH=229
          Length = 229

 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 170/229 (74%), Positives = 199/229 (86%), Gaps = 1/229 (0%)

Query: 90  MVDMKCAGCVNSVKEKLNTIKGVKNVEVDLSNQVVRILGSTPVKTMTEALEQTGRKARLI 149
           MVDM C GCVN+VK KL TI+G++ VEVDLSNQVVRILGS+PVK MT+ALEQTGRKARLI
Sbjct: 1   MVDMTCEGCVNAVKNKLETIEGIEKVEVDLSNQVVRILGSSPVKAMTQALEQTGRKARLI 60

Query: 150 GQGVPEDFLISAAVSEFKGPNIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDL 209
           GQGVP+DFL+SAAV+EFKGP+IFGVVR AQV+MELARIEANF+GLSPG H W INE+GDL
Sbjct: 61  GQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDL 120

Query: 210 TRGAASTGKVFNPTNEENTKEPLGDLGTLDVDEKGEAFYTGVRENLRVGDLIGRSLVVYA 269
           T GAASTG ++NP  ++   EPLGDLGTL+ D+ GEAFY+G +E L+V DLIGR++VVY 
Sbjct: 121 TNGAASTGSLYNPFQDQTGTEPLGDLGTLEADKNGEAFYSGKKEKLKVADLIGRAVVVYK 180

Query: 270 TED-KSEHGVAAAVIARSAGVGENYKKLCTCDGTTIWEASDRDFVTSKV 317
           T+D KS  G+ AAVIARSAGVGENYKKLC+CDGT IWEA++ DFV SKV
Sbjct: 181 TDDNKSGPGLTAAVIARSAGVGENYKKLCSCDGTVIWEATNSDFVASKV 229


>AT1G12520.3 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |
           chr1:4267277-4268206 REVERSE LENGTH=184
          Length = 184

 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 160/184 (86%), Gaps = 1/184 (0%)

Query: 135 MTEALEQTGRKARLIGQGVPEDFLISAAVSEFKGPNIFGVVRLAQVNMELARIEANFSGL 194
           MT+ALEQTGRKARLIGQGVP+DFL+SAAV+EFKGP+IFGVVR AQV+MELARIEANF+GL
Sbjct: 1   MTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGL 60

Query: 195 SPGKHGWSINEFGDLTRGAASTGKVFNPTNEENTKEPLGDLGTLDVDEKGEAFYTGVREN 254
           SPG H W INE+GDLT GAASTG ++NP  ++   EPLGDLGTL+ D+ GEAFY+G +E 
Sbjct: 61  SPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGTEPLGDLGTLEADKNGEAFYSGKKEK 120

Query: 255 LRVGDLIGRSLVVYATED-KSEHGVAAAVIARSAGVGENYKKLCTCDGTTIWEASDRDFV 313
           L+V DLIGR++VVY T+D KS  G+ AAVIARSAGVGENYKKLC+CDGT IWEA++ DFV
Sbjct: 121 LKVADLIGRAVVVYKTDDNKSGPGLTAAVIARSAGVGENYKKLCSCDGTVIWEATNSDFV 180

Query: 314 TSKV 317
            SKV
Sbjct: 181 ASKV 184


>AT2G28190.1 | Symbols: CSD2, CZSOD2 | copper/zinc superoxide
           dismutase 2 | chr2:12014548-12016303 FORWARD LENGTH=216
          Length = 216

 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 9/120 (7%)

Query: 162 AVSEFKG-PNIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVF 220
           AV+  KG  ++ GVV L Q +     +    +GL+PG HG+ ++EFGD T G  STG  F
Sbjct: 67  AVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHF 126

Query: 221 NPTN-----EENTKEPLGDLGTLDVDEKGEAFYTGVRENLRV---GDLIGRSLVVYATED 272
           NP N      E+     GDLG ++ +  G A  T V   + +     ++GR+ VV+  +D
Sbjct: 127 NPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKD 186


>AT1G08830.2 | Symbols: CSD1 | copper/zinc superoxide dismutase 1 |
           chr1:2827700-2829053 FORWARD LENGTH=152
          Length = 152

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 171 IFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNE----- 225
           + G +   Q    +  +    SGL PG HG+ ++  GD T G  STG  FNP  +     
Sbjct: 14  VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAP 73

Query: 226 ENTKEPLGDLGTLDVDEKGEAFYTGVRENLRV---GDLIGRSLVVYATED 272
           E+     GDLG + V + G A +T     + +     ++GR++VV+A  D
Sbjct: 74  EDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPD 123


>AT1G08830.1 | Symbols: CSD1 | copper/zinc superoxide dismutase 1 |
           chr1:2827700-2829053 FORWARD LENGTH=152
          Length = 152

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 171 IFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNE----- 225
           + G +   Q    +  +    SGL PG HG+ ++  GD T G  STG  FNP  +     
Sbjct: 14  VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAP 73

Query: 226 ENTKEPLGDLGTLDVDEKGEAFYTGVRENLRV---GDLIGRSLVVYATED 272
           E+     GDLG + V + G A +T     + +     ++GR++VV+A  D
Sbjct: 74  EDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPD 123


>AT5G18100.1 | Symbols: CSD3 | copper/zinc superoxide dismutase 3 |
           chr5:5987221-5988706 FORWARD LENGTH=164
          Length = 164

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 170 NIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNE---- 225
           N+ G ++  Q       +    SGLSPG HG+ I+ FGD T G  STG  FNP N     
Sbjct: 19  NVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGP 78

Query: 226 ENTKE-PLGDLGTLDVDEKGEAFYTGVRENLRVG---DLIGRSLVVYATED 272
            N +E   GDLG +     G A      +++ +     ++GR++VV+A  D
Sbjct: 79  PNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPD 129


>AT5G18100.2 | Symbols: CSD3 | copper/zinc superoxide dismutase 3 |
           chr5:5987221-5988436 FORWARD LENGTH=137
          Length = 137

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 170 NIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNE---- 225
           N+ G ++  Q       +    SGLSPG HG+ I+ FGD T G  STG  FNP N     
Sbjct: 19  NVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGP 78

Query: 226 ENTKE-PLGDLGTLDVDEKGEAFYTGVRENLRVG---DLIGRSLVVYATED 272
            N +E   GDLG +     G A      +++ +     ++GR++VV+A  D
Sbjct: 79  PNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPD 129


>AT3G02960.1 | Symbols:  | Heavy metal transport/detoxification
           superfamily protein  | chr3:667245-668626 REVERSE
           LENGTH=246
          Length = 246

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 54  RFTLVKAFVAPPSPLRMDTKLSNQTEHVLPELLTEYM-VDMKCAGCVNSVKEKLNTIKGV 112
           +F+     ++P    + D K   Q +   PE+ T  + ++M C GCV+ +K  +  IKG+
Sbjct: 94  KFSRNAEMISPKHNPKQDQKEPQQKKESAPEIKTAILRMNMHCEGCVHEIKRGIEKIKGI 153

Query: 113 KNVEVDLSNQVVRILG-STPVKTMTEALEQTGRKARLIGQ 151
           ++VE D S   V + G   P K + +  ++ G+ A L+ Q
Sbjct: 154 QSVEPDRSKSTVVVRGVMDPPKLVEKIKKKLGKHAELLSQ 193