Miyakogusa Predicted Gene

Lj0g3v0080309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0080309.1 Non Chatacterized Hit- tr|D6WFV5|D6WFV5_TRICA
Putative uncharacterized protein OS=Tribolium
castaneu,40.5,2e-17,RNase_H2_suC,Ribonuclease H2, subunit C;
PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE
SUBUNI,CUFF.4132.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39440.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ribonuclea...   160   2e-40

>AT2G39440.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ribonuclease
           H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits
           to 17322 proteins in 780 species: Archae - 12; Bacteria
           - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr2:16468220-16469113 REVERSE LENGTH=162
          Length = 162

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 98/149 (65%), Gaps = 8/149 (5%)

Query: 7   RIELKRDGTEDLTDRVHQLPCCVKHDGSAPVSHYFKPKPTGVGDEGLPLQEAHFRGRLLQ 66
           R     +   DL+ +VHQLPCC++ DG   VSHYFKPK + V  +G+  +EAHFRGR LQ
Sbjct: 7   RAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGRKLQ 66

Query: 67  GTTLQLPHGYSGFVLGKKTSPHAE--------EESSHSWETYAKFDNITYWNHDYLPSQN 118
           G T+ LP GYSGFVL + ++ +A          E +  WE  AKF+N+TYWNHD LPS++
Sbjct: 67  GATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPSKD 126

Query: 119 DDFSRAFHWLTVANALHNPVTPEELASAS 147
           D F R+FHW ++A ALH PV  E+L + S
Sbjct: 127 DTFFRSFHWFSIAEALHKPVKVEDLVAVS 155