Miyakogusa Predicted Gene

Lj0g3v0079889.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0079889.1 Non Chatacterized Hit- tr|H3ATW0|H3ATW0_LATCH
Uncharacterized protein (Fragment) OS=Latimeria
chalum,28.69,0.000000000000001,SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN,NULL;
seg,NULL,CUFF.4101.1
         (401 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01960.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   394   e-110

>AT5G01960.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:370811-372775 FORWARD LENGTH=426
          Length = 426

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/311 (61%), Positives = 237/311 (76%), Gaps = 7/311 (2%)

Query: 91  EVAISIVGRGDQLGTSSSENQVGELGCEEEIMSGERVRVAMSAEDRRAFAADNVPLVALP 150
           EVAI I+G  +Q    +  N + E G   E++     +V     D    A++     A  
Sbjct: 66  EVAIRIIGNTEQ-DAETDTNALREPG-HSELLGSSATQV-----DPMGGASEGASQAAPG 118

Query: 151 NAISGIPRDSSSPYGRLDVQQIAKWSEQILPFALLLLIVFVRQHWQGFFVTICVSAVMFK 210
           +  +G      SPY R D+QQ A+W EQILPF+LLLL+VF+RQH QGFFV I ++AVMFK
Sbjct: 119 DPAAGDAASRDSPYQRYDIQQAARWIEQILPFSLLLLVVFIRQHLQGFFVAIWIAAVMFK 178

Query: 211 SNEIVKKQTALKGDRKVSVLLSIAFAFMFYVMCIYWWHCNDDLLSPLAMVPPKATPPFWH 270
           SN+I+KKQTALKG+R +S L+ I+ AF  +V+ +YWW   DDLL PL M+PPK+ PPFWH
Sbjct: 179 SNDILKKQTALKGERHISALIGISVAFTAHVVGVYWWFRKDDLLYPLIMLPPKSIPPFWH 238

Query: 271 TIFIVLVNDTLVRQATMAFKCLLLIYYKDSRGHNFRRQAQMLTLVEYTLLLYRALLPTPV 330
            IFI++VNDTLVRQA+M FKC LL+YYK+SRG N+R+Q Q+LTLVEY +LLYR+LLPTPV
Sbjct: 239 AIFIIVVNDTLVRQASMIFKCFLLMYYKNSRGRNYRKQGQLLTLVEYFMLLYRSLLPTPV 298

Query: 331 WYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVRCFFSALKALSKHEVHYGAYATMEQV 390
           WYRFFLNK+YGSLFSSL TGLYLTFKLTSVVEKV+ FF+ALKALS+ EVHYG+YAT EQV
Sbjct: 299 WYRFFLNKDYGSLFSSLMTGLYLTFKLTSVVEKVQSFFTALKALSRKEVHYGSYATTEQV 358

Query: 391 NAAGNLCAICQ 401
           NAAG+LCAICQ
Sbjct: 359 NAAGDLCAICQ 369