Miyakogusa Predicted Gene

Lj0g3v0079379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0079379.1 Non Chatacterized Hit- tr|B9RRF5|B9RRF5_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,45.45,0.00000000000002,seg,NULL,CUFF.4074.1
         (441 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00930.1 | Symbols: CIP4.1 | COP1-interacting protein 4.1 | c...    79   6e-15
AT5G37190.1 | Symbols: CIP4 | COP1-interacting protein 4 | chr5:...    79   7e-15
AT4G00920.1 | Symbols:  | COP1-interacting protein-related | chr...    70   3e-12
AT1G55860.1 | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:...    65   7e-11
AT2G01800.1 | Symbols:  | COP1-interacting protein-related | chr...    63   3e-10
AT2G01800.3 | Symbols:  | COP1-interacting protein-related | chr...    63   4e-10
AT2G01800.2 | Symbols:  | COP1-interacting protein-related | chr...    63   5e-10
AT2G02770.1 | Symbols:  | 4'-phosphopantetheinyl transferase sup...    62   7e-10
AT1G30060.1 | Symbols:  | COP1-interacting protein-related | chr...    60   3e-09
AT4G00580.1 | Symbols:  | COP1-interacting protein-related | chr...    60   4e-09

>AT4G00930.1 | Symbols: CIP4.1 | COP1-interacting protein 4.1 |
           chr4:396558-400734 FORWARD LENGTH=1133
          Length = 1133

 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 52/87 (59%)

Query: 53  VFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLVD 112
           VF++TNLDT  A  V   + + D K ++  EH   FP+ G INI A+KVKR+  FY   +
Sbjct: 15  VFVETNLDTRLALPVHKDEIISDFKDKVLKEHKQVFPEIGEINISAMKVKRRREFYHFSE 74

Query: 113 SMCVRVAFNGSKKSWFLSVEASALGEG 139
           S+ V  AF+G    WF+ ++A  + +G
Sbjct: 75  SLNVCKAFDGISTDWFMYIDAVRVDKG 101


>AT5G37190.1 | Symbols: CIP4 | COP1-interacting protein 4 |
           chr5:14723362-14726694 REVERSE LENGTH=876
          Length = 876

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 55/94 (58%)

Query: 46  SSDNTKGVFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKG 105
           SS   + VF++TNLDT     V   + + D K R+  EH   FP+ G I I A+KVKR+ 
Sbjct: 8   SSPEIRCVFVETNLDTRLILHVHKDEIISDFKDRLLKEHKQVFPEIGEIQISALKVKRRR 67

Query: 106 CFYQLVDSMCVRVAFNGSKKSWFLSVEASALGEG 139
            FY   DS+ V  AF+G  ++WF+ ++A  + +G
Sbjct: 68  KFYHFSDSLHVCKAFDGISRNWFMYIDAIRVDKG 101


>AT4G00920.1 | Symbols:  | COP1-interacting protein-related |
           chr4:393767-395382 FORWARD LENGTH=314
          Length = 314

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 46  SSDNTKGVFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKG 105
           SS   + VF++TNLDT     +   D V   K++I  EH + FP FG I I A+KVK  G
Sbjct: 8   SSPEIRCVFVETNLDTRLGVLMERDDIVSTFKEKICKEHETCFPSFGNITISALKVKCGG 67

Query: 106 CFYQLVDSMCVRVAFNGSKKSWFLSVEASALGEGAKSDQLVPHASPNQVASLDNLQLLQL 165
            FY LVDS+ +  AF    K  FL V+   + E  K   ++   +P     L N  LL+ 
Sbjct: 68  QFYHLVDSLILNTAF--PSKETFLVVDVLRVEEKGK---MLTGETP-----LSNPNLLER 117

Query: 166 ENK 168
           E K
Sbjct: 118 ETK 120


>AT1G55860.1 | Symbols: UPL1 | ubiquitin-protein ligase 1 |
           chr1:20879900-20895393 REVERSE LENGTH=3930
          Length = 3930

 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%)

Query: 53  VFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLVD 112
           VF +T+L T     V +  T  D K++++  H S     G I +H + VKRK  FY LV+
Sbjct: 9   VFAETSLGTRIVMAVPLDITAADFKRKLEKTHASCLSSVGEIEVHGLMVKRKSRFYHLVE 68

Query: 113 SMCVRVAFNGSKKSWFLSVEASALGEGAKS 142
           S+ +R  F  ++K WF+  EA  +    +S
Sbjct: 69  SVPIRYIFLDNQKPWFIHAEARVVSRSQES 98


>AT2G01800.1 | Symbols:  | COP1-interacting protein-related |
           chr2:343766-345254 REVERSE LENGTH=304
          Length = 304

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 53  VFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLVD 112
           VF+ T++DT  A  +   D+V+  K++I  EH   FP  G I I A+KV   G  Y L D
Sbjct: 10  VFVKTSIDTRLALLLDSDDSVYAFKEKICKEHEQCFPSVGNITISALKVNLGGNDYHLSD 69

Query: 113 SMCVRVAFNGSK-KSWFLSVE 132
              ++ A  G + K WFLSV+
Sbjct: 70  CTILKTALQGLRNKDWFLSVD 90


>AT2G01800.3 | Symbols:  | COP1-interacting protein-related |
           chr2:343766-345254 REVERSE LENGTH=281
          Length = 281

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 53  VFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLVD 112
           VF+ T++DT  A  +   D+V+  K++I  EH   FP  G I I A+KV   G  Y L D
Sbjct: 10  VFVKTSIDTRLALLLDSDDSVYAFKEKICKEHEQCFPSVGNITISALKVNLGGNDYHLSD 69

Query: 113 SMCVRVAFNGSK-KSWFLSVE 132
              ++ A  G + K WFLSV+
Sbjct: 70  CTILKTALQGLRNKDWFLSVD 90


>AT2G01800.2 | Symbols:  | COP1-interacting protein-related |
           chr2:343766-345254 REVERSE LENGTH=249
          Length = 249

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 53  VFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLVD 112
           VF+ T++DT  A  +   D+V+  K++I  EH   FP  G I I A+KV   G  Y L D
Sbjct: 10  VFVKTSIDTRLALLLDSDDSVYAFKEKICKEHEQCFPSVGNITISALKVNLGGNDYHLSD 69

Query: 113 SMCVRVAFNGSK-KSWFLSVE 132
              ++ A  G + K WFLSV+
Sbjct: 70  CTILKTALQGLRNKDWFLSVD 90


>AT2G02770.1 | Symbols:  | 4'-phosphopantetheinyl transferase
           superfamily | chr2:775657-779786 REVERSE LENGTH=661
          Length = 661

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 44/81 (54%)

Query: 51  KGVFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQL 110
           K VF+ TN+DT     +   DTV   K++I  EH   FP FG I I A+KV   G  Y L
Sbjct: 7   KCVFVTTNMDTRLGLLMDKDDTVSTFKEKICKEHEQCFPSFGNITISALKVNCCGQLYHL 66

Query: 111 VDSMCVRVAFNGSKKSWFLSV 131
           VDS+ +  AF  ++   F+ V
Sbjct: 67  VDSLTLNTAFQSNESFLFVDV 87


>AT1G30060.1 | Symbols:  | COP1-interacting protein-related |
           chr1:10545087-10545906 REVERSE LENGTH=176
          Length = 176

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 53  VFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLVD 112
           VF+ T++DT     +   D+V   K +I  EH   FP  G I I A+KV   G  Y L D
Sbjct: 10  VFVKTSIDTRMGLLLDSDDSVSAFKDKICKEHEQCFPSVGNITISALKVNLGGNDYHLSD 69

Query: 113 SMCVRVAFNG-SKKSWFLSV 131
            M ++ A  G S K WFLSV
Sbjct: 70  CMILKTALQGLSNKDWFLSV 89


>AT4G00580.1 | Symbols:  | COP1-interacting protein-related |
           chr4:248713-250258 FORWARD LENGTH=317
          Length = 317

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 53  VFIDTNLDTHFATDVSVHDTVWDLKKRIKSEHPSQFPKFGPINIHAIKVKRKGCFYQLVD 112
           VF+ T++DT     +  HD+V   K +   EH   FP  G I + A+KV   G  Y L D
Sbjct: 9   VFVKTSIDTRLGLLLDSHDSVSSFKDKFCKEHELCFPSVGNITVSALKVNVSGNDYHLSD 68

Query: 113 SMCVRVAFNG-SKKSWFLSVE 132
           SM ++ A  G S + +FLSV+
Sbjct: 69  SMILKKALQGLSNEDFFLSVD 89