Miyakogusa Predicted Gene
- Lj0g3v0079229.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0079229.1 Non Chatacterized Hit- tr|K4CNM2|K4CNM2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.74,4e-18,seg,NULL,CUFF.4062.1
(158 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41945.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 219 6e-58
AT2G41945.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 218 1e-57
AT2G41945.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 199 5e-52
AT5G18250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 76 9e-15
AT3G04040.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 74 6e-14
>AT2G41945.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G04040.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:17511071-17512898 REVERSE LENGTH=158
Length = 158
Score = 219 bits (558), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 105/153 (68%), Positives = 119/153 (77%)
Query: 1 MGTREVYEQKLKTGNLDHDPTLNPGLGSARCPRCLSLLNPNPERGEWTINSVLHDATAVA 60
MGTR+VYE+KL+ GNLD+DPT+NPGLGSARCPRCLSLLNPN E+GEWTI VLHDA AVA
Sbjct: 1 MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVA 60
Query: 61 GSGIGSMLSAVHGLNTGLPYLQNRLKGPKWLPFVVGLPPLLIFSGASAAFGGYMLPKFTQ 120
GSGIG +LSAVH NTG+PYLQNR G K L F+VG+P LL++SG AAFGGY LPKF Q
Sbjct: 61 GSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQ 120
Query: 121 LTVTXXXXXXXXXXXGISLLTRHIEDKSNSETQ 153
LTVT GIS+LTR IE+ S TQ
Sbjct: 121 LTVTSYYASSSASHYGISMLTRRIEEAHLSRTQ 153
>AT2G41945.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: membrane; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04040.1); Has 57 Blast hits to 57 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr2:17509933-17512898 REVERSE
LENGTH=166
Length = 166
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/153 (68%), Positives = 119/153 (77%)
Query: 1 MGTREVYEQKLKTGNLDHDPTLNPGLGSARCPRCLSLLNPNPERGEWTINSVLHDATAVA 60
MGTR+VYE+KL+ GNLD+DPT+NPGLGSARCPRCLSLLNPN E+GEWTI VLHDA AVA
Sbjct: 1 MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVA 60
Query: 61 GSGIGSMLSAVHGLNTGLPYLQNRLKGPKWLPFVVGLPPLLIFSGASAAFGGYMLPKFTQ 120
GSGIG +LSAVH NTG+PYLQNR G K L F+VG+P LL++SG AAFGGY LPKF Q
Sbjct: 61 GSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGGYALPKFAQ 120
Query: 121 LTVTXXXXXXXXXXXGISLLTRHIEDKSNSETQ 153
LTVT GIS+LTR IE+ S TQ
Sbjct: 121 LTVTSYYASSSASHYGISMLTRRIEEAHLSRTQ 153
>AT2G41945.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: membrane; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G18250.1); Has 57 Blast hits to 57 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr2:17509933-17512898 REVERSE
LENGTH=204
Length = 204
Score = 199 bits (507), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 119/191 (62%), Gaps = 38/191 (19%)
Query: 1 MGTREVYEQKLKTGNLDHDPTLNPGLGSARCPRCLSLLNPNPERGEWTINSVLHDATAVA 60
MGTR+VYE+KL+ GNLD+DPT+NPGLGSARCPRCLSLLNPN E+GEWTI VLHDA AVA
Sbjct: 1 MGTRQVYEEKLRRGNLDYDPTMNPGLGSARCPRCLSLLNPNSEKGEWTITPVLHDAAAVA 60
Query: 61 GSGIGSMLSAVHGLNTGLPYLQNRLKGPKWLPFVVGLPPLLIFSGASAAFG--------- 111
GSGIG +LSAVH NTG+PYLQNR G K L F+VG+P LL++SG AAFG
Sbjct: 61 GSGIGGLLSAVHAFNTGIPYLQNRFSGSKRLSFLVGVPLLLVYSGVGAAFGESLQAAISF 120
Query: 112 -----------------------------GYMLPKFTQLTVTXXXXXXXXXXXGISLLTR 142
GY LPKF QLTVT GIS+LTR
Sbjct: 121 PIVWLEYESRCAAQCRIATFTFSLLFDVPGYALPKFAQLTVTSYYASSSASHYGISMLTR 180
Query: 143 HIEDKSNSETQ 153
IE+ S TQ
Sbjct: 181 RIEEAHLSRTQ 191
>AT5G18250.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G04040.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:6033797-6035216 FORWARD LENGTH=133
Length = 133
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 30 RCPRCLSLLNPNPERGEWTINSVLHDATAVAGSGIGSMLSAVHGLNTGLPYLQNRLKGPK 89
RC C L N E +WT++ + D+ ++ GS +G SA G N +P ++ +KGP
Sbjct: 11 RCHHCAGPLTRNLETSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIVRKWIKGPM 70
Query: 90 WLPFVVGLPPLLIFSGASAAFGGYMLPKFTQL 121
WL F+VG PP+++ S A A G +P QL
Sbjct: 71 WLHFLVGAPPVIVLSSACAGLAGGTVPALAQL 102
>AT3G04040.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G18250.1); Has 58 Blast hits to 58 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr3:1047754-1049026 FORWARD
LENGTH=138
Length = 138
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 29 ARCPRCLSLLNPNPERGEWTINSVLHDATAVAGSGIGSMLSAVHGLNTGLPYLQNRLKGP 88
+RC C L N E EWT+ + D+ ++ GS +G SA G + +P ++ +KGP
Sbjct: 14 SRCHHCAGPLTKNLETNEWTVAPFIRDSFSMIGSAVGGTASAFIGFHHVMPIVRKWIKGP 73
Query: 89 KWLPFVVGLPPLLIFSGASAAFGGYMLPKFTQLT 122
WL F+VG PP+++ S A A G +P QL
Sbjct: 74 MWLHFLVGAPPVIVVSSACAGLAGGAVPALAQLA 107