Miyakogusa Predicted Gene

Lj0g3v0079039.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0079039.1 Non Chatacterized Hit- tr|I3S4X3|I3S4X3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.1,0,seg,NULL;
26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11 (26S PROTEASOME
REGULATORY SUBUNIT S9),NUL,CUFF.4048.1
         (423 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29150.1 | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:...   657   0.0  
AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome f...    72   7e-13

>AT1G29150.1 | Symbols: ATS9, RPN6 | non-ATPase subunit 9 |
           chr1:10181240-10182499 FORWARD LENGTH=419
          Length = 419

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/415 (78%), Positives = 354/415 (85%), Gaps = 1/415 (0%)

Query: 9   ATTESVALALEAKDPSDAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLR 68
           ATTE+++LALEA + S+AI+ILY+VL+DPSSSPEA+R+KEQAITNL D L +E RGEDLR
Sbjct: 6   ATTETISLALEA-NSSEAITILYQVLEDPSSSPEAIRIKEQAITNLCDRLTEEKRGEDLR 64

Query: 69  GLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGSSDLQIALCKEMVQWTRAEKRTFLRQ 128
            LLT+LRPFFSLIPKAKTAKIVRGIID+VAKIPG++DLQI LCKEMV+WTRAEKRTFLRQ
Sbjct: 65  KLLTKLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTTDLQITLCKEMVEWTRAEKRTFLRQ 124

Query: 129 RVEARLAALLMETKEYSEALTLLSGLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXX 188
           RVEARLAALLME KEY EAL LLS LVK                     HFSLR      
Sbjct: 125 RVEARLAALLMENKEYVEALALLSTLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAK 184

Query: 189 XXXXXXXXXXXXIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAV 248
                       IYVPPAQQG IDLQSGILHAEEKDYKT YSYFFEAFESFNAL DP+AV
Sbjct: 185 AALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFESFNALGDPRAV 244

Query: 249 FSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRD 308
           FSLKYMLLCKIMV+QADDV GIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFE ALRD
Sbjct: 245 FSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFENALRD 304

Query: 309 YKAQLEEDPIVHRHLQSLYGTLMEQNLCRLIEPFSRVEIAHIAELIELPIEHVERKLSQM 368
           YKAQLE+DPIVHRHL SLY TL+EQNLCRLIEPFSRVEIAHIAELI LP++HVE+KLSQM
Sbjct: 305 YKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQM 364

Query: 369 ILDKKFAGTLDQGAGCLIIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 423
           ILDKKFAGTLDQGAGCLIIF+DPK DAIY ATLETI+N+GKVVDSLYVRSAKIM+
Sbjct: 365 ILDKKFAGTLDQGAGCLIIFEDPKADAIYSATLETIANMGKVVDSLYVRSAKIMS 419


>AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome
           family protein | chr2:11519684-11522412 REVERSE
           LENGTH=439
          Length = 439

 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 91/176 (51%), Gaps = 2/176 (1%)

Query: 205 PAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVNQA 264
           P   G I    G +H  E+ ++ A + FFEAF++++   + + +  LKY++L  +++   
Sbjct: 227 PRIMGIIRECGGKMHMAERQWEEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM--E 284

Query: 265 DDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDYKAQLEEDPIVHRHLQ 324
            +V      +A      P++ AM  +  A+ +  +  FE  L+  +  + +DP +  +++
Sbjct: 285 SEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFERILKSNRRTIMDDPFIRNYME 344

Query: 325 SLYGTLMEQNLCRLIEPFSRVEIAHIAELIELPIEHVERKLSQMILDKKFAGTLDQ 380
            L   +  Q L +LI+P++++ I  I++ + +P   V   L  +ILD +  G +D+
Sbjct: 345 DLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLILDSRIDGHIDE 400