Miyakogusa Predicted Gene

Lj0g3v0078809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078809.1 Non Chatacterized Hit- tr|B9SEW5|B9SEW5_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,44.74,4e-19,Nup160,Nucleoporin Nup120/160; seg,NULL,CUFF.4033.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33410.2 | Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 | ...    87   5e-18
AT1G33410.1 | Symbols: SAR1, NUP160, ATNUP160 | SUPPRESSOR OF AU...    86   6e-18

>AT1G33410.2 | Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 |
           chr1:12109769-12118828 REVERSE LENGTH=1504
          Length = 1504

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 73/114 (64%)

Query: 1   MVASAQDLVICELREKKFLFVLHLDGTLRIWDLASHGRVFTHNMGVMAMAGANFQRLWVG 60
           +VA+ QDL I E+  + +L VLH DG LR+WD+ ++ RV   ++    + G    RLW+G
Sbjct: 233 VVAAVQDLFISEVHGRNYLCVLHADGALRVWDILTYSRVLCQSIAAKNLEGVMCVRLWLG 292

Query: 61  QSYPELSRIPLAILYGHSPDENLGMISLHGILYNVGDRIIFSMEPSVQNLSLEE 114
           ++  +   IPLA+LY  S ++++ +I+++G+ ++  + I  S++  +QN+ LEE
Sbjct: 293 KADYDSGIIPLAVLYRKSMNDSMDVITVYGLHFSSAEGIALSLDSGLQNIPLEE 346


>AT1G33410.1 | Symbols: SAR1, NUP160, ATNUP160 | SUPPRESSOR OF AUXIN
           RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504
          Length = 1504

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 73/114 (64%)

Query: 1   MVASAQDLVICELREKKFLFVLHLDGTLRIWDLASHGRVFTHNMGVMAMAGANFQRLWVG 60
           +VA+ QDL I E+  + +L VLH DG LR+WD+ ++ RV   ++    + G    RLW+G
Sbjct: 224 VVAAVQDLFISEVHGRNYLCVLHADGALRVWDILTYSRVLCQSIAAKNLEGVMCVRLWLG 283

Query: 61  QSYPELSRIPLAILYGHSPDENLGMISLHGILYNVGDRIIFSMEPSVQNLSLEE 114
           ++  +   IPLA+LY  S ++++ +I+++G+ ++  + I  S++  +QN+ LEE
Sbjct: 284 KADYDSGIIPLAVLYRKSMNDSMDVITVYGLHFSSAEGIALSLDSGLQNIPLEE 337