Miyakogusa Predicted Gene

Lj0g3v0078799.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078799.1 tr|G7ZWR4|G7ZWR4_MEDTR NBS-LRR resistance-like
protein 1O OS=Medicago truncatula GN=MTR_043s0017 PE=,53.4,1e-18,no
description,NULL; L domain-like,NULL,CUFF.4028.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07040.1 | Symbols: RPM1, RPS3 | NB-ARC domain-containing dis...    48   2e-06

>AT3G07040.1 | Symbols: RPM1, RPS3 | NB-ARC domain-containing
           disease resistance protein | chr3:2226244-2229024
           REVERSE LENGTH=926
          Length = 926

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 51  LQHINLEDCSSLRSLPEEMPHLTNLQTPEIIHPDNRLIEECENEASTTRHKIAHIPKI 108
           LQ + +  C  L  +P  + +L NLQ   +IH  N+L+E    E S  R ++ HIP I
Sbjct: 852 LQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAI 909