Miyakogusa Predicted Gene

Lj0g3v0078789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078789.1 tr|A4S2E7|A4S2E7_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_33429,31.5,0.000000000000003,SAP30_Sin3_bdg,Histone
deacetylase complex subunit SAP30, Sin3 binding domain; SUBFAMILY NOT
NAMED,N,CUFF.4029.1
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19330.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   330   4e-91
AT1G75060.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   328   2e-90
AT1G19330.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   327   5e-90
AT1G19330.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   327   5e-90
AT1G75060.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   324   3e-89

>AT1G19330.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins
           in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40;
           Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes -
           1 (source: NCBI BLink). | chr1:6680824-6683290 REVERSE
           LENGTH=242
          Length = 242

 Score =  330 bits (847), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 182/230 (79%), Positives = 193/230 (83%), Gaps = 5/230 (2%)

Query: 1   MLEATMESSSVNGGGDRFSQLQS-CGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG 58
           MLEA   S  VNGG   F Q+QS  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG
Sbjct: 1   MLEAVDSSGVVNGG---FPQIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG 57

Query: 59  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDMASDD 118
           VVKKAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNEEDDDL+FENTQ NGSDM S+D
Sbjct: 58  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMTSED 117

Query: 119 TQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAALWRYWR 178
           T K HKS+ R  RS  SSHKT SRS S+DSQSK S   P    KVDLSKLEM AL  YWR
Sbjct: 118 TLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEMPALLNYWR 177

Query: 179 HFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRLKTMCK 228
           HFNLVDA+PNPSKEQL+D+VQRHFMSQQMDELQVI+GFVQAAKR+K  CK
Sbjct: 178 HFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 227


>AT1G75060.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins
           in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:28181481-28183285 REVERSE
           LENGTH=242
          Length = 242

 Score =  328 bits (842), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 191/233 (81%), Gaps = 5/233 (2%)

Query: 1   MLEATMESSSV-NGGGDRFSQLQSC-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQ 57
           MLEA +  SS+ NGGG  FSQLQSC GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQ
Sbjct: 1   MLEAPVNKSSILNGGGGGFSQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQ 60

Query: 58  GVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFEN-TQWN-GSDMA 115
           GVVKKAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNEED+DLE ++ TQWN  SDM 
Sbjct: 61  GVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHSTQWNHPSDMT 120

Query: 116 SDDTQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAALWR 175
           ++DT K HKS+ R HRS   S K   R  S DS SK S   P    KVDL+KL+MAAL R
Sbjct: 121 TEDTLKPHKSKKRGHRSSRLSQKALYREVSCDSHSKISSITPRLNMKVDLTKLDMAALLR 180

Query: 176 YWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRLKTMCK 228
           YWRHFNLVDA+PNP+KEQL+D++QRHFMSQQMDELQVI+GFVQAA  +K  C+
Sbjct: 181 YWRHFNLVDALPNPTKEQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKKACQ 233


>AT1G19330.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G75060.1). | chr1:6680824-6683290 REVERSE
           LENGTH=248
          Length = 248

 Score =  327 bits (837), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/236 (73%), Positives = 186/236 (78%), Gaps = 11/236 (4%)

Query: 1   MLEATMESSSVNGGGDRFSQLQS-CGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG 58
           MLEA   S  VNGG   F Q+QS  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG
Sbjct: 1   MLEAVDSSGVVNGG---FPQIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG 57

Query: 59  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDM---- 114
           VVKKAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNEEDDDL+FENTQ NGSDM    
Sbjct: 58  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMIVSF 117

Query: 115 -ASDDTQKSHKSRHRTHRSLGSSHKT-TSRSFSADSQSKGSISMPHGWTKVDLSKLEMAA 172
            AS+DT K HKS+ R  RS  SSHKT +    S         + P    KVDLSKLEM A
Sbjct: 118 PASEDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMQKVDLSKLEMPA 177

Query: 173 LWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRLKTMCK 228
           L  YWRHFNLVDA+PNPSKEQL+D+VQRHFMSQQMDELQVI+GFVQAAKR+K  CK
Sbjct: 178 LLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 233


>AT1G19330.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins
           in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40;
           Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes -
           1 (source: NCBI BLink). | chr1:6680824-6683290 REVERSE
           LENGTH=247
          Length = 247

 Score =  327 bits (837), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 183/235 (77%), Positives = 194/235 (82%), Gaps = 10/235 (4%)

Query: 1   MLEATMESSSVNGGGDRFSQLQS-CGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG 58
           MLEA   S  VNGG   F Q+QS  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG
Sbjct: 1   MLEAVDSSGVVNGG---FPQIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG 57

Query: 59  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDM---- 114
           VVKKAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNEEDDDL+FENTQ NGSDM    
Sbjct: 58  VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMIVSF 117

Query: 115 -ASDDTQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAAL 173
            AS+DT K HKS+ R  RS  SSHKT SRS S+DSQSK S   P    KVDLSKLEM AL
Sbjct: 118 PASEDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEMPAL 177

Query: 174 WRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRLKTMCK 228
             YWRHFNLVDA+PNPSKEQL+D+VQRHFMSQQMDELQVI+GFVQAAKR+K  CK
Sbjct: 178 LNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 232


>AT1G75060.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G19330.2);
           Has 104 Blast hits to 104 proteins in 22 species: Archae
           - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:28181481-28183285 REVERSE LENGTH=241
          Length = 241

 Score =  324 bits (830), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/233 (73%), Positives = 190/233 (81%), Gaps = 6/233 (2%)

Query: 1   MLEATMESSSV-NGGGDRFSQLQSC-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQ 57
           MLEA +  SS+ NGGG  FSQLQSC GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQ
Sbjct: 1   MLEAPVNKSSILNGGGGGFSQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQ 60

Query: 58  GVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFEN-TQWN-GSDMA 115
           GVVKKAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNEED+DLE ++ TQWN  SDM 
Sbjct: 61  GVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHSTQWNHPSDMT 120

Query: 116 SDDTQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAALWR 175
           ++DT K HKS+ R HRS   S K   R  S DS SK S   P     VDL+KL+MAAL R
Sbjct: 121 TEDTLKPHKSKKRGHRSSRLSQKALYREVSCDSHSKISSITPR-LNMVDLTKLDMAALLR 179

Query: 176 YWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRLKTMCK 228
           YWRHFNLVDA+PNP+KEQL+D++QRHFMSQQMDELQVI+GFVQAA  +K  C+
Sbjct: 180 YWRHFNLVDALPNPTKEQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKKACQ 232