Miyakogusa Predicted Gene

Lj0g3v0078359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078359.1 tr|B4D8U4|B4D8U4_9BACT Cytoplasmic membrane
protein (Precursor) OS=Chthoniobacter flavus Ellin428
GN,30.92,0.000000000005,DUF2062,Domain of unknown function DUF2062;
seg,NULL,CUFF.3987.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33490.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   254   2e-68
AT4G10140.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   245   1e-65

>AT1G33490.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2062
           (InterPro:IPR018639); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT4G10140.1); Has 88
           Blast hits to 88 proteins in 29 species: Archae - 0;
           Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54;
           Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
           | chr1:12150941-12152276 REVERSE LENGTH=175
          Length = 175

 Score =  254 bits (649), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 141/162 (87%)

Query: 1   MAIGKMGITDWFHRKITDPLLSIIRRGAEPNQLAFSAALGITFGVFPICGVTVFLCAMAI 60
           MAI K  +  WF +KI++PL+ I+RRGAEP QLAFSAALGIT GVFPICGVTV LC +AI
Sbjct: 1   MAISKGRLKVWFDKKISEPLIQILRRGAEPKQLAFSAALGITMGVFPICGVTVLLCGVAI 60

Query: 61  ALLGSYCHAPTVMLANFVATPIELSLVVPFLRFGEVISGGPHFPLTSDALKKVFTGQASR 120
           A LGS CHAPTVMLANF+ATPIELSLVVPFLR GE I+GGPHFPLTSDALKKVFTGQASR
Sbjct: 61  ASLGSLCHAPTVMLANFIATPIELSLVVPFLRLGEKITGGPHFPLTSDALKKVFTGQASR 120

Query: 121 EVLLSVAHALLGWLVASPFILGTLYIVLLPCFKFLVQKFSTV 162
           +V LS+ +ALLGWL+A+PF++  LYI+ LPCFK LV+KFS+V
Sbjct: 121 DVFLSIGNALLGWLIAAPFVIVALYIMFLPCFKILVRKFSSV 162


>AT4G10140.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF2062
           (InterPro:IPR018639); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G33490.1); Has 30201
           Blast hits to 17322 proteins in 780 species: Archae -
           12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
           Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
           (source: NCBI BLink). | chr4:6322538-6324421 FORWARD
           LENGTH=183
          Length = 183

 Score =  245 bits (625), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 141/183 (77%), Gaps = 1/183 (0%)

Query: 1   MAIGKMGITDWFHRKITDPLLSIIRRGAEPNQLAFSAALGITFGVFPICGVTVFLCAMAI 60
           M + K  +  WF++KITDPLL I+RRG EP QLAFSAALGIT G+FPICGV V LC +A 
Sbjct: 1   MGLSKGRLKAWFNKKITDPLLQILRRGTEPKQLAFSAALGITLGIFPICGVPVLLCGVAF 60

Query: 61  ALLGSYCHAPTVMLANFVATPIELSLVVPFLRFGEVISGGPHFPLTSDALKKVFTGQASR 120
           ALLGS CHAPTVMLAN +ATP+EL+LVVPFLR GE ++GGPHFPLTSDALKKVFTGQAS+
Sbjct: 61  ALLGSSCHAPTVMLANIIATPVELALVVPFLRLGEKVTGGPHFPLTSDALKKVFTGQASQ 120

Query: 121 EVLLSVAHALLGWLVASPFILGTLYIVLLPCFKFLVQKFSTVXXXXXXXXXXXXXEISLK 180
           EV LS+ +ALLGWLVA+PF   TLY+VLLPCF  LV+KF  V             E++ K
Sbjct: 121 EVFLSIGNALLGWLVATPFFFITLYVVLLPCFTILVRKFGGV-ASTQKLPTSMETELNPK 179

Query: 181 VRD 183
            RD
Sbjct: 180 PRD 182