Miyakogusa Predicted Gene

Lj0g3v0078349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078349.1 Non Chatacterized Hit- tr|C6SVR3|C6SVR3_SOYBN
Uncharacterized protein OS=Glycine max PE=2
SV=1,85.71,5e-18,seg,NULL,CUFF.3986.1
         (66 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33490.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...    52   1e-07
AT4G10140.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    49   5e-07

>AT1G33490.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF2062
           (InterPro:IPR018639); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT4G10140.1); Has 88
           Blast hits to 88 proteins in 29 species: Archae - 0;
           Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54;
           Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
           | chr1:12150941-12152276 REVERSE LENGTH=175
          Length = 175

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 29/34 (85%)

Query: 11  QLLGWLVASPFILGTLYIVLLPCFKFLVQKFSTV 44
            LLGWL+A+PF++  LYI+ LPCFK LV+KFS+V
Sbjct: 129 ALLGWLIAAPFVIVALYIMFLPCFKILVRKFSSV 162


>AT4G10140.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF2062
           (InterPro:IPR018639); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G33490.1); Has 30201
           Blast hits to 17322 proteins in 780 species: Archae -
           12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
           Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
           (source: NCBI BLink). | chr4:6322538-6324421 FORWARD
           LENGTH=183
          Length = 183

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 12  LLGWLVASPFILGTLYIVLLPCFKFLVQKFSTVXXXXXXXXXXXXXEISLKVRDV 66
           LLGWLVA+PF   TLY+VLLPCF  LV+KF  V             E++ K RD 
Sbjct: 130 LLGWLVATPFFFITLYVVLLPCFTILVRKFGGV-ASTQKLPTSMETELNPKPRDA 183