Miyakogusa Predicted Gene
- Lj0g3v0078139.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0078139.1 Non Chatacterized Hit- tr|A9NUN8|A9NUN8_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,57.61,3e-19,RRM_1,RNA recognition motif domain; RRM,RNA recognition
motif domain; RNA-binding domain, RBD,NULL;
,NODE_61310_length_304_cov_174.796051.path1.1
(96 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 162 6e-41
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 161 8e-41
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 121 8e-29
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 121 8e-29
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 118 8e-28
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 118 1e-27
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 118 1e-27
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 118 1e-27
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 116 3e-27
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 116 3e-27
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 116 4e-27
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 116 4e-27
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-17
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-17
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 69 7e-13
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-10
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-09
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-08
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/96 (80%), Positives = 84/96 (87%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEVKRAVPKELSPGP RSPL
Sbjct: 140 MYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGA 199
Query: 61 SYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
Y+YG+NR ++ LN YAQGFN VGG G+RMDGRF
Sbjct: 200 GYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRF 235
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 161 bits (408), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 77/96 (80%), Positives = 84/96 (87%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDHNTQRPRGFGFITYDSEEAV++VL KTFHELNGKMVEVKRAVPKELSPGP RSPL
Sbjct: 140 MYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGA 199
Query: 61 SYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
Y+YG+NR ++ LN YAQGFN VGG G+RMDGRF
Sbjct: 200 GYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRF 235
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 75/95 (78%), Gaps = 6/95 (6%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLI 59
MYDHNTQRPRGFGFIT+DSEE+VD VL KTFHELNGKMVEVKRAVPKELS P RSPLI
Sbjct: 154 MYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLI 213
Query: 60 G-SYNYGL--NRAS--SYLNSYAQGFNMNPVGGLG 89
G NYG+ NR+S SY NS+ G+N N +G G
Sbjct: 214 GYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSAG 248
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 75/95 (78%), Gaps = 6/95 (6%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLI 59
MYDHNTQRPRGFGFIT+DSEE+VD VL KTFHELNGKMVEVKRAVPKELS P RSPLI
Sbjct: 151 MYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLI 210
Query: 60 G-SYNYGL--NRAS--SYLNSYAQGFNMNPVGGLG 89
G NYG+ NR+S SY NS+ G+N N +G G
Sbjct: 211 GYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSAG 245
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDH TQRPRGFGFI+YDSEEAVD+VL KTFHELNGKMVEVK AVPK+++ +R+ +
Sbjct: 160 MYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQM-N 218
Query: 61 SYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
++G +R SS LN Y QGF+ +P+ G GV+ + R+
Sbjct: 219 VNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRY 254
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDH TQRPRGFGFI+YDSEEAVD+VL KTFHELNGKMVEVK AVPK+++ +R+ +
Sbjct: 78 MYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQM-N 136
Query: 61 SYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
++G +R SS LN Y QGF+ +P+ G GV+ + R+
Sbjct: 137 VNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRY 172
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDH TQRPRGFGFI+YDSEEAVD+VL KTFHELNGKMVEVK AVPK+++ +R+ +
Sbjct: 138 MYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQM-N 196
Query: 61 SYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
++G +R SS LN Y QGF+ +P+ G GV+ + R+
Sbjct: 197 VNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRY 232
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIG 60
MYDH TQRPRGFGFI+YDSEEAVD+VL KTFHELNGKMVEVK AVPK+++ +R+ +
Sbjct: 138 MYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQM-N 196
Query: 61 SYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRF 96
++G +R SS LN Y QGF+ +P+ G GV+ + R+
Sbjct: 197 VNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRY 232
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 69/84 (82%), Gaps = 5/84 (5%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLI 59
MYDHNTQRPRGFGFIT+DS++AVDRVL KTFHELNGK+VEVKRAVPKE+SP IRSPL
Sbjct: 142 MYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLA 201
Query: 60 GSYNY--GLNR--ASSYLNSYAQG 79
NY G NR A+SY N++A G
Sbjct: 202 SGVNYGGGSNRMPANSYFNNFAPG 225
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 69/84 (82%), Gaps = 5/84 (5%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLI 59
MYDHNTQRPRGFGFIT+DS++AVDRVL KTFHELNGK+VEVKRAVPKE+SP IRSPL
Sbjct: 142 MYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLA 201
Query: 60 GSYNY--GLNR--ASSYLNSYAQG 79
NY G NR A+SY N++A G
Sbjct: 202 SGVNYGGGSNRMPANSYFNNFAPG 225
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 69/84 (82%), Gaps = 5/84 (5%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLI 59
MYDHNTQRPRGFGFIT+DS++AVDRVL KTFHELNGK+VEVKRAVPKE+SP IRSPL
Sbjct: 142 MYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLA 201
Query: 60 GSYNY--GLNR--ASSYLNSYAQG 79
NY G NR A+SY N++A G
Sbjct: 202 SGVNYGGGSNRMPANSYFNNFAPG 225
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 69/84 (82%), Gaps = 5/84 (5%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLI 59
MYDHNTQRPRGFGFIT+DS++AVDRVL KTFHELNGK+VEVKRAVPKE+SP IRSPL
Sbjct: 142 MYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLA 201
Query: 60 GSYNY--GLNR--ASSYLNSYAQG 79
NY G NR A+SY N++A G
Sbjct: 202 SGVNYGGGSNRMPANSYFNNFAPG 225
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP 51
M D TQRPRGFGF+++DSE++VD VL KTFH+LNGK VEVKRA+PK+ +P
Sbjct: 142 MIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDANP 192
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP 51
MYD T RPRGFGF+++DSE+AVD VL KTFH+L+GK VEVKRA+PK+ +P
Sbjct: 142 MYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKE 48
M+D T RPRGFGF+TYDSE++V+ V+ FHEL+ K VEVKRA+PKE
Sbjct: 152 MHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKE 199
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFK-TFHELNGKMVEVKRAVPK 47
MYDH+T R RGFGF+T+ +E++VDR+ HEL K VE+KRA PK
Sbjct: 189 MYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 6/70 (8%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFH-ELNGKMVEVKRAVPKELSPGPIRSPLI 59
M DH+T R RGFGF+TY+SE+ VD +L K EL+G VE+K+A PK+ P + +P
Sbjct: 162 MRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK--PNSVTTP-- 217
Query: 60 GSYNYGLNRA 69
S +G +R+
Sbjct: 218 -SKRFGDSRS 226
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPK 47
M D T +PRGFGF+TY VD+V+ + H + GK VE+KR +P+
Sbjct: 74 MKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPR 119
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPK 47
M D +T +PRGFGFIT+ VD+V+ T H +NGK VE+KR +PK
Sbjct: 51 MRDRHTGQPRGFGFITFADPSVVDKVIEDT-HVINGKQVEIKRTIPK 96
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFK-TFHELNGKMVEVKRAVPKE-LSPGPIRSPL 58
+ DH T R RGFGF+ +DSEE VD +L K ++ VE+K+A PK+ L+ P P
Sbjct: 141 IRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSP---PS 197
Query: 59 IGSYNYGLNRASSYLN 74
GS+ G + SY +
Sbjct: 198 YGSHPRGRSSNDSYAS 213
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 1 MYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPK 47
M D +T +PRGFGFIT+ VD+V+ T H +NGK VE+KR +PK
Sbjct: 51 MRDRHTGQPRGFGFITFADPSVVDKVIEDT-HVINGKQVEIKRTIPK 96