Miyakogusa Predicted Gene

Lj0g3v0078009.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0078009.1 Non Chatacterized Hit- tr|B9RVF0|B9RVF0_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,44.97,0.0000000000001,seg,NULL,CUFF.3968.1
         (211 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06930.1 | Symbols:  | unknown protein; Has 4478 Blast hits t...    49   2e-06

>AT1G06930.1 | Symbols:  | unknown protein; Has 4478 Blast hits to
          355 proteins in 82 species: Archae - 0; Bacteria - 29;
          Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25;
          Other Eukaryotes - 3800 (source: NCBI BLink). |
          chr1:2129163-2129672 FORWARD LENGTH=169
          Length = 169

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 14/74 (18%)

Query: 21 KLDHHEKLTRQLSNFSSSNEAYHGGKSASIPFTWESQPGTPKVR--------------FQ 66
          +LD     T +L    +    Y+GG SA++PF WESQPGTP+                F 
Sbjct: 3  QLDRSRVSTTKLILSVAVEGDYYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFN 62

Query: 67 DNYLPPLTPPPSYF 80
               PLTPPPSYF
Sbjct: 63 FPVSAPLTPPPSYF 76