Miyakogusa Predicted Gene

Lj0g3v0077829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0077829.1 Non Chatacterized Hit- tr|I1PIK2|I1PIK2_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,41.55,3e-18,PREDICTED PROTEIN (FRAGMENT),NULL; MEMBRANE
ASSOCIATED RING FINGER,NULL; seg,NULL,CUFF.3954.1
         (286 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60580.3 | Symbols:  | RING/U-box superfamily protein | chr5:...   156   1e-38
AT5G60580.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   156   1e-38
AT5G60580.4 | Symbols:  | RING/U-box superfamily protein | chr5:...   156   2e-38
AT5G60580.2 | Symbols:  | RING/U-box superfamily protein | chr5:...   156   2e-38
AT3G09760.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    86   4e-17
AT5G03180.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    61   1e-09
AT5G03180.2 | Symbols:  | RING/U-box superfamily protein | chr5:...    59   5e-09

>AT5G60580.3 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=487
          Length = 487

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 152/264 (57%), Gaps = 19/264 (7%)

Query: 27  DESSDVHHLKNHNLLLEMPXXXXXXXXXXDFVAIRMPLTPSPTPTHKRVNFLVTSRSVDA 86
           D S++V   +  NL L++P          D V I+M   P+P+PT +RVNF +TS S   
Sbjct: 34  DTSANVQQWRRKNLSLQIPSRAAGLSPE-DSVVIKM--PPTPSPTPRRVNFALTSSS--- 87

Query: 87  PMXXXXXXXXXXXXXXRGKSSIRSMLPKLNFKHRRSSSDIEKAVLTAAAPXXXXXXXXXX 146
                           RGKSS++++LPK   K + S++DIEK    A +P          
Sbjct: 88  ----PGPTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKASIS 143

Query: 147 XXXXXRTVSLTKIFTPKINRTSSLPVEEIGRANTESALGG--CLGGSPYRKEGT-IARTR 203
                R++SL+K+FTP+I RTSSLPV  +  +N+ESA GG      +P RK    IAR+R
Sbjct: 144 -----RSLSLSKLFTPRIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGSVHIARSR 198

Query: 204 SEPVDNQEKSLKKMDKYYRIIHSSPRVKEWNDWLTMSKAKDTXXXXXXXXXX-XXXAVCR 262
           S P++++E SLK MD ++R+I S+PRVKE + +   S+A +T              AVCR
Sbjct: 199 SVPLNDKELSLKGMDSFFRVIPSTPRVKEGDVFSNASEAGNTETGDADGEDIPEDEAVCR 258

Query: 263 ICMVDLCEGGETFKMECSCKGELA 286
           IC+V+LCEGGET KMECSCKGELA
Sbjct: 259 ICLVELCEGGETLKMECSCKGELA 282


>AT5G60580.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=487
          Length = 487

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 152/264 (57%), Gaps = 19/264 (7%)

Query: 27  DESSDVHHLKNHNLLLEMPXXXXXXXXXXDFVAIRMPLTPSPTPTHKRVNFLVTSRSVDA 86
           D S++V   +  NL L++P          D V I+M   P+P+PT +RVNF +TS S   
Sbjct: 34  DTSANVQQWRRKNLSLQIPSRAAGLSPE-DSVVIKM--PPTPSPTPRRVNFALTSSS--- 87

Query: 87  PMXXXXXXXXXXXXXXRGKSSIRSMLPKLNFKHRRSSSDIEKAVLTAAAPXXXXXXXXXX 146
                           RGKSS++++LPK   K + S++DIEK    A +P          
Sbjct: 88  ----PGPTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKASIS 143

Query: 147 XXXXXRTVSLTKIFTPKINRTSSLPVEEIGRANTESALGG--CLGGSPYRKEGT-IARTR 203
                R++SL+K+FTP+I RTSSLPV  +  +N+ESA GG      +P RK    IAR+R
Sbjct: 144 -----RSLSLSKLFTPRIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGSVHIARSR 198

Query: 204 SEPVDNQEKSLKKMDKYYRIIHSSPRVKEWNDWLTMSKAKDTXXXXXXXXXX-XXXAVCR 262
           S P++++E SLK MD ++R+I S+PRVKE + +   S+A +T              AVCR
Sbjct: 199 SVPLNDKELSLKGMDSFFRVIPSTPRVKEGDVFSNASEAGNTETGDADGEDIPEDEAVCR 258

Query: 263 ICMVDLCEGGETFKMECSCKGELA 286
           IC+V+LCEGGET KMECSCKGELA
Sbjct: 259 ICLVELCEGGETLKMECSCKGELA 282


>AT5G60580.4 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=494
          Length = 494

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 152/264 (57%), Gaps = 19/264 (7%)

Query: 27  DESSDVHHLKNHNLLLEMPXXXXXXXXXXDFVAIRMPLTPSPTPTHKRVNFLVTSRSVDA 86
           D S++V   +  NL L++P          D V I+M   P+P+PT +RVNF +TS S   
Sbjct: 34  DTSANVQQWRRKNLSLQIPSRAAGLSPE-DSVVIKM--PPTPSPTPRRVNFALTSSS--- 87

Query: 87  PMXXXXXXXXXXXXXXRGKSSIRSMLPKLNFKHRRSSSDIEKAVLTAAAPXXXXXXXXXX 146
                           RGKSS++++LPK   K + S++DIEK    A +P          
Sbjct: 88  ----PGPTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKASIS 143

Query: 147 XXXXXRTVSLTKIFTPKINRTSSLPVEEIGRANTESALGG--CLGGSPYRKEGT-IARTR 203
                R++SL+K+FTP+I RTSSLPV  +  +N+ESA GG      +P RK    IAR+R
Sbjct: 144 -----RSLSLSKLFTPRIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGSVHIARSR 198

Query: 204 SEPVDNQEKSLKKMDKYYRIIHSSPRVKEWNDWLTMSKAKDTXXXXXXXXXX-XXXAVCR 262
           S P++++E SLK MD ++R+I S+PRVKE + +   S+A +T              AVCR
Sbjct: 199 SVPLNDKELSLKGMDSFFRVIPSTPRVKEGDVFSNASEAGNTETGDADGEDIPEDEAVCR 258

Query: 263 ICMVDLCEGGETFKMECSCKGELA 286
           IC+V+LCEGGET KMECSCKGELA
Sbjct: 259 ICLVELCEGGETLKMECSCKGELA 282


>AT5G60580.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=494
          Length = 494

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 152/264 (57%), Gaps = 19/264 (7%)

Query: 27  DESSDVHHLKNHNLLLEMPXXXXXXXXXXDFVAIRMPLTPSPTPTHKRVNFLVTSRSVDA 86
           D S++V   +  NL L++P          D V I+M   P+P+PT +RVNF +TS S   
Sbjct: 34  DTSANVQQWRRKNLSLQIPSRAAGLSPE-DSVVIKM--PPTPSPTPRRVNFALTSSS--- 87

Query: 87  PMXXXXXXXXXXXXXXRGKSSIRSMLPKLNFKHRRSSSDIEKAVLTAAAPXXXXXXXXXX 146
                           RGKSS++++LPK   K + S++DIEK    A +P          
Sbjct: 88  ----PGPTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKASIS 143

Query: 147 XXXXXRTVSLTKIFTPKINRTSSLPVEEIGRANTESALGG--CLGGSPYRKEGT-IARTR 203
                R++SL+K+FTP+I RTSSLPV  +  +N+ESA GG      +P RK    IAR+R
Sbjct: 144 -----RSLSLSKLFTPRIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNRKGSVHIARSR 198

Query: 204 SEPVDNQEKSLKKMDKYYRIIHSSPRVKEWNDWLTMSKAKDTXXXXXXXXXX-XXXAVCR 262
           S P++++E SLK MD ++R+I S+PRVKE + +   S+A +T              AVCR
Sbjct: 199 SVPLNDKELSLKGMDSFFRVIPSTPRVKEGDVFSNASEAGNTETGDADGEDIPEDEAVCR 258

Query: 263 ICMVDLCEGGETFKMECSCKGELA 286
           IC+V+LCEGGET KMECSCKGELA
Sbjct: 259 ICLVELCEGGETLKMECSCKGELA 282


>AT3G09760.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:2992975-2995451 REVERSE LENGTH=491
          Length = 491

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 119/266 (44%), Gaps = 21/266 (7%)

Query: 29  SSDVHHLKNHNLLLEMPXXXXXXXXXXDFVAIRMPLTPSPTPTHKRVNFLVTSRSVDAPM 88
           SS    L    L+L++P          D       LT SP    KRVNF   S       
Sbjct: 39  SSPGRDLWRRGLVLDLPSTTPEDTTRDDLFRRNASLTSSPVA--KRVNFSPMSSPRVGQR 96

Query: 89  XXXXXXXXXXXXXXRGK-SSIRSMLPKLNFKHRRSSSD---IEKAVLTAAAPXXXXXXXX 144
                         R K +S+++++PKL+FK+R S++D   IEKA     A         
Sbjct: 97  GASLSPSSSTSSSSRNKPNSLKNLIPKLSFKNRNSNNDNVDIEKA-----ADLGFVSSPS 151

Query: 145 XXXXXXXRTVSLTKIFTPKINRTSSLPVEEIGRANTESALG-GCLGGSPYRKEGT---IA 200
                   T +LT I TP++ +T SLPV  I  +N ES  G   +      K+G    I 
Sbjct: 152 SGNGRDRSTWTLTNILTPRLKKTESLPVTPIAHSNPESTHGRFAVDLVTSTKKGPPLPIH 211

Query: 201 RTRSEPVDNQEKSLKKMDKYYRIIHSSPRVKEWNDWLTMSKAKDTXXXXXXXXXXXXXAV 260
           R+RS P  N++ S +++   +R+I  +P +    + + ++ A                AV
Sbjct: 212 RSRSVPAFNKDGSQRQLG-VFRVI-PTPNMSPTRNTIKLNDAN----VDGAEDVPEEEAV 265

Query: 261 CRICMVDLCEGGETFKMECSCKGELA 286
           CRIC+V+L E  E FKMEC C+GELA
Sbjct: 266 CRICLVELGEDSEAFKMECLCRGELA 291


>AT5G03180.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:754201-756411 REVERSE LENGTH=462
          Length = 462

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 82/188 (43%), Gaps = 19/188 (10%)

Query: 106 SSIRSMLPKLNFKHRRSSSDIEKAVLTAAAPXXXXXXXXXXXXXXXRTVSLTKIFTPKIN 165
           SS R+   + NFK+R  S+DIE+ V++                   RT SLT +  P+ +
Sbjct: 97  SSSRNRTNQKNFKNRNHSADIEEGVVSPLG-------DGSDKSYIPRTWSLTNLLAPRKS 149

Query: 166 R------TSSLPVEEIGRANTESALGGCLGGSPYRKEGTIARTRSEPVDNQEKSLKKMDK 219
           +      T S P    GR   E      + G    +   I RTRS P    +    K   
Sbjct: 150 KKTESFITHSNPESMNGRYAVEVDPVTSMKG---ERLLPIRRTRSVPTFFNKDGSVKPSS 206

Query: 220 YYRIIHSSPRVKEWNDWLTMSKA-KDTXXXXXXXXXXXXXAVCRICMVDLCEGGETFKME 278
            +R+I +  R  E    L M++A K               AVCRICMV++ E  E FKME
Sbjct: 207 VFRVIPTPSRGDE--KRLEMTQASKLNENDDGGEDVPEEEAVCRICMVEMEEDEEAFKME 264

Query: 279 CSCKGELA 286
           C CKGELA
Sbjct: 265 CMCKGELA 272


>AT5G03180.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:754201-756411 REVERSE LENGTH=466
          Length = 466

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 82/191 (42%), Gaps = 21/191 (10%)

Query: 106 SSIRSMLPKLNFKHRRSSSDIEKAVLTAAAPXXXXXXXXXXXXXXXRTVSLTKIFTPKIN 165
           SS R+   + NFK+R  S+DIE+ V++                   RT SLT +  P+ +
Sbjct: 97  SSSRNRTNQKNFKNRNHSADIEEGVVSPLG-------DGSDKSYIPRTWSLTNLLAPRKS 149

Query: 166 R------TSSLPVEEIGRANTESALGGCLGGSPYRKEGTIARTRSEPVDNQEKSLKKMDK 219
           +      T S P    GR   E      + G    +   I RTRS P    +    K   
Sbjct: 150 KKTESFITHSNPESMNGRYAVEVDPVTSMKG---ERLLPIRRTRSVPTFFNKDGSVKPSS 206

Query: 220 YYRIIHSSPRVKEWNDWLT----MSKAKDTXXXXXXXXXXXXXAVCRICMVDLCEGGETF 275
            +R+I +  R  E    +T    +SK  D              AVCRICMV++ E  E F
Sbjct: 207 VFRVIPTPSRGDEKRLEMTQASKLSKLHD-ENDDGGEDVPEEEAVCRICMVEMEEDEEAF 265

Query: 276 KMECSCKGELA 286
           KMEC CKGELA
Sbjct: 266 KMECMCKGELA 276