Miyakogusa Predicted Gene

Lj0g3v0077789.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0077789.1 tr|G7I4E3|G7I4E3_MEDTR DNA polymerase I family
protein expressed OS=Medicago truncatula
GN=MTR_1g008,59.71,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; DNA POLYMERASE THETA,NULL; HELICA,CUFF.3947.1
         (719 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32700.2 | Symbols:  | helicases;ATP-dependent helicases;nucl...   545   e-155
AT5G61140.1 | Symbols:  | U5 small nuclear ribonucleoprotein hel...    62   2e-09
AT5G61140.2 | Symbols:  | U5 small nuclear ribonucleoprotein hel...    62   2e-09
AT2G42270.1 | Symbols:  | U5 small nuclear ribonucleoprotein hel...    60   6e-09
AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprot...    54   3e-07
AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprot...    54   3e-07
AT3G27730.1 | Symbols: RCK, MER3 | ATP binding;ATP-dependent hel...    51   3e-06

>AT4G32700.2 | Symbols:  | helicases;ATP-dependent helicases;nucleic
           acid binding;ATP binding;DNA-directed DNA
           polymerases;DNA binding | chr4:15767440-15779185 FORWARD
           LENGTH=2154
          Length = 2154

 Score =  545 bits (1403), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 343/744 (46%), Positives = 435/744 (58%), Gaps = 59/744 (7%)

Query: 1   MASSSPWNRINQFYASKKRKAVSPVPKVGRFEKGARHGVDGSPSAKGTLDSYLVGSPDDC 60
           M S S  +RI+QFY SKKRK  SP  K GR EK  +   + SP  KGTLDSYL  S DD 
Sbjct: 1   MDSDSSKSRIDQFYVSKKRKHQSPNLKSGRNEKNVKVTGERSPGDKGTLDSYLKASLDDK 60

Query: 61  NDVGRLNAAASGSVKRNLASEITSSLDYGLDKQP-IPS------------AHGHQNPQAT 107
           +       A   +  R L  E+++S   G +  P +P              +G Q+    
Sbjct: 61  STTNSGLQARQEAFTRKLDLEVSAS-SVGQNIHPCLPKPVSFATFKECLGQNGSQDLH-- 117

Query: 108 KPGVVNEVPKASCDSLEDAIPGNSFSGFEHGAKNSELKQFVADCVSIYCGELRPRISSPS 167
           K GV  E    + D L  A          +   NSEL+ F    +S+YC  ++  + SP 
Sbjct: 118 KEGVAAET--HATDGLLCA----------NQKDNSELRDFATSFLSLYCSGVQSVVGSPP 165

Query: 168 EMKVDGHKRDDSLMSVEEISNTMGD---GSQQKCNDSSEPHVGGENISNDKMPDEVMAGV 224
                 H++++ L      S+   D     +++C   + P +          P+ +    
Sbjct: 166 ------HQKENELKRRSSSSSLAQDIQISHKRRCESENIPSLDDLTNPLGSKPESLARN- 218

Query: 225 VGNTTGDVSACSAKDSGDGDAIALDMSLRKCSYTNTPKASKSMAECYTPGSLIVKACIKD 284
            GN      +   K     +++ + M LRKCS    P++S  + E +TPGS I K+C   
Sbjct: 219 -GNNRDKPVSDPTKKMPSNESVEIPMGLRKCS--KAPESSAHLTEFHTPGSAI-KSCPVG 274

Query: 285 TPKSTRGSSMFSPGEAFWNEAIQLADGLCVPVVNDSSKVIEESNVAEDQAEVKNSCNLQN 344
           TPKS  GSSMFSPGEAFWNEAIQ+ADGL +P+ N  S    E+ V  DQ     SC+ + 
Sbjct: 275 TPKSGCGSSMFSPGEAFWNEAIQVADGLTIPIENFGSV---EAKV-RDQHVTILSCSKKT 330

Query: 345 --YDGKQRKVLDQSKSRIWDREMSTPLGLARMHTQESIKEASGLPVKHFDFSFEDKNLDE 402
                K  + LD  + R+ D++      +   H ++  KE   LPVK+ +  F+DKN++ 
Sbjct: 331 DKCTEKLERSLDLDEIRVKDKDAIGFSKVVEKHGRDFNKEVYQLPVKNLELLFQDKNING 390

Query: 403 NTRQNCCVDDLVNVACGAGRQYESGSITGHAYEKM----NEVQEKASVDAL-----GKR- 452
             ++ C   D  N+  G+ R  ES  +     E +    N   +K  +  +     GK+ 
Sbjct: 391 GIQERCASFDQNNITLGSSRISESAFVGNKGCENLDIANNAQADKGLIGKMYPEPEGKKV 450

Query: 453 -LCQDNASMTSNSPPNQVMTAIGRHASDEASTPSSSVKLNDHLDLSSWLPPEICSIYRKK 511
            LC++N  + S S  + +   +G   S+E+ TPSSS +  D L LS+WLP E+CS+Y KK
Sbjct: 451 LLCEENRGVRSVSMISNMRKPVGSSESEESHTPSSSHRNYDGLSLSTWLPSEVCSVYNKK 510

Query: 512 GISKLYSWQVDCLRVNGVLQRRNLVYCASTSAGKSFVAEILMLRRVITTGKMAVLVLPYV 571
           GISKLY WQV+CL+V+GVLQ+RNLVYCASTSAGKSFVAE+LMLRRVI TGKMA+LVLPYV
Sbjct: 511 GISKLYPWQVECLQVDGVLQKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMALLVLPYV 570

Query: 572 SICAEKAEHLEQLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRL 631
           SICAEKAEHLE LLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRL
Sbjct: 571 SICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRL 630

Query: 632 SEMGIIVIDELHMVGDQSRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGL 691
           SE+GIIVIDELHMVGDQ RGYLLELMLTKLRYAA                  KADP  GL
Sbjct: 631 SELGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGSSESSSGESSGTSSGKADPAHGL 690

Query: 692 QIVGMSATMPNVAAVADWLQVPIY 715
           QIVGMSATMPNV AVADWLQ  +Y
Sbjct: 691 QIVGMSATMPNVGAVADWLQAALY 714


>AT5G61140.1 | Symbols:  | U5 small nuclear ribonucleoprotein helicase
            | chr5:24589999-24603311 FORWARD LENGTH=2146
          Length = 2146

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 534  NLVYCASTSAGKSFVAEILMLRRVITTGKMAVLVL-PYVSICAEKAEHLEQ-LLEPLGKH 591
            N++  A T +GK+  AE+ MLR   T   M V+ + P  +I  E+    ++ L+ PLGK 
Sbjct: 1362 NVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKE 1421

Query: 592  VRSYYGNQGGGTLPKDTS-VAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDQSR 650
            +    G+     +   ++ + + T EK + +         + ++G++++DE+H++G   R
Sbjct: 1422 MVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLG-ADR 1480

Query: 651  GYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPNVAAVADWL 710
            G +LE++++++RY +                       + ++ VG+S  + N   +ADWL
Sbjct: 1481 GPILEVIVSRMRYISSQTE-------------------RSVRFVGLSTALANAGDLADWL 1521

Query: 711  QV 712
             V
Sbjct: 1522 GV 1523



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 32/190 (16%)

Query: 534 NLVYCASTSAGKSFVAEILMLRRV---ITTGKM------AVLVLPYVSICAEKAEHLEQL 584
           N++ CA T AGK+ +A I +L  +      G +       V V P  ++ AE      + 
Sbjct: 525 NILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSRR 584

Query: 585 LEPLGKHVRSYYGN-QGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELH 643
           L PL   V+   G+ Q   T  ++T + V T EK + +  +  +      + +++IDE+H
Sbjct: 585 LAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEVH 644

Query: 644 MVGDQSRGYLLELMLTK-LRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPN 702
           ++ D  RG ++E ++ + LR                            ++IVG+SAT+P+
Sbjct: 645 LLND-DRGAVIEALVARTLRQVESTQTM--------------------IRIVGLSATLPS 683

Query: 703 VAAVADWLQV 712
              VA +L+V
Sbjct: 684 YLQVAQFLRV 693


>AT5G61140.2 | Symbols:  | U5 small nuclear ribonucleoprotein helicase
            | chr5:24589999-24603311 FORWARD LENGTH=2157
          Length = 2157

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 90/182 (49%), Gaps = 23/182 (12%)

Query: 534  NLVYCASTSAGKSFVAEILMLRRVITTGKMAVLVL-PYVSICAEKAEHLEQ-LLEPLGKH 591
            N++  A T +GK+  AE+ MLR   T   M V+ + P  +I  E+    ++ L+ PLGK 
Sbjct: 1373 NVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKE 1432

Query: 592  VRSYYGNQGGGTLPKDTS-VAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDQSR 650
            +    G+     +   ++ + + T EK + +         + ++G++++DE+H++G   R
Sbjct: 1433 MVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLG-ADR 1491

Query: 651  GYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPNVAAVADWL 710
            G +LE++++++RY +                       + ++ VG+S  + N   +ADWL
Sbjct: 1492 GPILEVIVSRMRYISSQTE-------------------RSVRFVGLSTALANAGDLADWL 1532

Query: 711  QV 712
             V
Sbjct: 1533 GV 1534



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 32/190 (16%)

Query: 534 NLVYCASTSAGKSFVAEILMLRRV---ITTGKM------AVLVLPYVSICAEKAEHLEQL 584
           N++ CA T AGK+ +A I +L  +      G +       V V P  ++ AE      + 
Sbjct: 525 NILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSRR 584

Query: 585 LEPLGKHVRSYYGN-QGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELH 643
           L PL   V+   G+ Q   T  ++T + V T EK + +  +  +      + +++IDE+H
Sbjct: 585 LAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEVH 644

Query: 644 MVGDQSRGYLLELMLTK-LRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPN 702
           ++ D  RG ++E ++ + LR                            ++IVG+SAT+P+
Sbjct: 645 LLND-DRGAVIEALVARTLRQVESTQTM--------------------IRIVGLSATLPS 683

Query: 703 VAAVADWLQV 712
              VA +L+V
Sbjct: 684 YLQVAQFLRV 693


>AT2G42270.1 | Symbols:  | U5 small nuclear ribonucleoprotein
           helicase | chr2:17604330-17610848 FORWARD LENGTH=2172
          Length = 2172

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 48/255 (18%)

Query: 479 DEASTPSSSVKL--NDHL----DLSSWLPPEICSIYRKKGI-SKLYSWQVDCLRVNGVLQ 531
           DE   P  S K   N+ L    DL  W  P    + +   + SK+Y           + +
Sbjct: 469 DEVHVPWVSKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYG--------TALFK 520

Query: 532 RRNLVYCASTSAGKSFVAEILMLRRV---------ITTGKMAVL-VLPYVSICAEKAEHL 581
             N++ CA T AGK+ VA + +L ++            G   ++ V P  ++ AE  + L
Sbjct: 521 ADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSL 580

Query: 582 EQLLEPLGKHVRSYYGNQG-GGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVID 640
            Q L+  G  V+   G+Q   G   K+T + V T EK + +  +  +      + +++ID
Sbjct: 581 SQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIID 640

Query: 641 ELHMVGDQSRGYLLELMLTK-LRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSAT 699
           E+H++ D +RG +LE ++ + LR                          + +++VG+SAT
Sbjct: 641 EIHLL-DDNRGPVLESIVARTLRQIESTK--------------------EHIRLVGLSAT 679

Query: 700 MPNVAAVADWLQVPI 714
           +PN   VA +L+V +
Sbjct: 680 LPNCDDVASFLRVDL 694



 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 25/182 (13%)

Query: 534  NLVYCASTSAGKSFVAEILMLRRVIT---TGKMAVLVLPYVSICAEKAEHLEQLL-EPLG 589
            N+V  A T +GK+  AE  +LR  +    +    V + P  +I  E+    E+   + LG
Sbjct: 1369 NVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLG 1428

Query: 590  KHVRSYYGNQGGGT-LPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDQ 648
              V    G       L +   + + T EK ++L  R  +   + ++ + ++DELH++G Q
Sbjct: 1429 LRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQ 1488

Query: 649  SRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATMPNVAAVAD 708
              G +LE++++++RY +                         ++IV +S ++ N   + +
Sbjct: 1489 G-GQVLEVIVSRMRYISSQVG-------------------NKIRIVALSTSLANAKDLGE 1528

Query: 709  WL 710
            W+
Sbjct: 1529 WI 1530


>AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
           helicase, putative | chr1:7302591-7309914 REVERSE
           LENGTH=2171
          Length = 2171

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 113/254 (44%), Gaps = 46/254 (18%)

Query: 479 DEASTP--SSSVKLNDHL----DLSSWLPPEICSIYRKKGISKLYSWQVDCLRVNGVLQR 532
           DE   P  S  V  N+ L    ++  W  P        KG+ +L   Q        + + 
Sbjct: 468 DEVHVPWVSKKVDRNEKLVKITEMPDWAQPAF------KGMQQLNRVQSKVYD-TALFKA 520

Query: 533 RNLVYCASTSAGKSFVAEILMLRRVI----TTGKM------AVLVLPYVSICAEKAEHLE 582
            N++ CA T AGK+ VA + +L+++     T G         V V P  ++ AE   +L 
Sbjct: 521 ENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLS 580

Query: 583 QLLEPLGKHVRSYYGNQG-GGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDE 641
             L+  G  VR   G+Q   G   ++T + V T EK + +  +  +      + +++IDE
Sbjct: 581 NRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDE 640

Query: 642 LHMVGDQSRGYLLELMLTK-LRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATM 700
           +H++ D +RG +LE ++ + LR                          + +++VG+SAT+
Sbjct: 641 IHLLHD-NRGPVLESIVARTLRQIETTK--------------------ENIRLVGLSATL 679

Query: 701 PNVAAVADWLQVPI 714
           PN   VA +L+V +
Sbjct: 680 PNYEDVALFLRVDL 693


>AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
           helicase, putative | chr1:7302591-7309914 REVERSE
           LENGTH=2171
          Length = 2171

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 113/254 (44%), Gaps = 46/254 (18%)

Query: 479 DEASTP--SSSVKLNDHL----DLSSWLPPEICSIYRKKGISKLYSWQVDCLRVNGVLQR 532
           DE   P  S  V  N+ L    ++  W  P        KG+ +L   Q        + + 
Sbjct: 468 DEVHVPWVSKKVDRNEKLVKITEMPDWAQPAF------KGMQQLNRVQSKVYD-TALFKA 520

Query: 533 RNLVYCASTSAGKSFVAEILMLRRVI----TTGKM------AVLVLPYVSICAEKAEHLE 582
            N++ CA T AGK+ VA + +L+++     T G         V V P  ++ AE   +L 
Sbjct: 521 ENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLS 580

Query: 583 QLLEPLGKHVRSYYGNQG-GGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDE 641
             L+  G  VR   G+Q   G   ++T + V T EK + +  +  +      + +++IDE
Sbjct: 581 NRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDE 640

Query: 642 LHMVGDQSRGYLLELMLTK-LRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGMSATM 700
           +H++ D +RG +LE ++ + LR                          + +++VG+SAT+
Sbjct: 641 IHLLHD-NRGPVLESIVARTLRQIETTK--------------------ENIRLVGLSATL 679

Query: 701 PNVAAVADWLQVPI 714
           PN   VA +L+V +
Sbjct: 680 PNYEDVALFLRVDL 693


>AT3G27730.1 | Symbols: RCK, MER3 | ATP binding;ATP-dependent
           helicases;DNA helicases | chr3:10273952-10280213 REVERSE
           LENGTH=1133
          Length = 1133

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 31/197 (15%)

Query: 534 NLVYCASTSAGKSFVAEILMLR----RVITTGKM--------AVLVLPYVSICAEKAEHL 581
           N++  A T +GK+ + E+ +LR     +   G           V + P  ++  EK    
Sbjct: 42  NMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDW 101

Query: 582 EQLLEPLGKHVRSYYGNQGGGTLP--KDTSVAVCTIEKANSLINRLLEEGRL---SEMGI 636
            Q     G       G+    +    +D  + + T EK +++    +  G L   S++ +
Sbjct: 102 NQKFNSWGISCLELTGDNETYSTKNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIAL 161

Query: 637 IVIDELHMVGDQSRGYLLELMLTKLRYAAXXXXXXXXXXXXXXXXXXKADPIQGLQIVGM 696
           ++IDE+H++ D  RG  LE ++++L+  +                  ++  +  ++++ +
Sbjct: 162 VLIDEVHLLND-PRGAALEAIVSRLKILSSNHEL-------------RSSTLASVRLLAV 207

Query: 697 SATMPNVAAVADWLQVP 713
           SAT+PN+  +A+WL+VP
Sbjct: 208 SATIPNIEDLAEWLKVP 224