Miyakogusa Predicted Gene

Lj0g3v0076579.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0076579.2 tr|C1N2V4|C1N2V4_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_5167,34.95,4e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,Protein of unknown function DUF775;
DUF775,Prote,CUFF.3874.2
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66080.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   234   2e-62

>AT1G66080.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF775
           (InterPro:IPR008493); Has 285 Blast hits to 283 proteins
           in 133 species: Archae - 0; Bacteria - 0; Metazoa - 120;
           Fungi - 88; Plants - 50; Viruses - 0; Other Eukaryotes -
           27 (source: NCBI BLink). | chr1:24600356-24601027
           REVERSE LENGTH=190
          Length = 190

 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/190 (63%), Positives = 133/190 (70%), Gaps = 21/190 (11%)

Query: 1   MFGVVFPNRSFPIDISTFAQIDTFHWILDMNHFVGEAYDQVTEVCIFLLNGFTLX----- 55
           MFGVVFPNRSFPIDISTF QIDTFHW+LDMNHFVGEAYDQ++E+CIFLLN F L      
Sbjct: 1   MFGVVFPNRSFPIDISTFTQIDTFHWVLDMNHFVGEAYDQISEMCIFLLNNFNLPPDKAL 60

Query: 56  ---------------XXXXXXXXXXXXXXXXXXXXXXXXQLTA-DAQPLSAKIGVSVEDL 99
                                                  QLTA D+  LSAKIGVSVED+
Sbjct: 61  AVYVQSPGSAFVFCGAVTLARPSAVLSLQWPEPGSAAKMQLTAGDSSSLSAKIGVSVEDV 120

Query: 100 ATLPSLDVAGEKRIERLAMKVGENLFNFMQSFCGVDGSKLIVPMDILDRWFIKFQERAKR 159
           A L SLDV  E+RIE+LAMKVGENLFNFMQSFCGVDGSKL+VPMDILDRWF KFQE+AKR
Sbjct: 121 AALRSLDVVAERRIEKLAMKVGENLFNFMQSFCGVDGSKLVVPMDILDRWFKKFQEKAKR 180

Query: 160 DPEYLKGFAL 169
           DP++LK FAL
Sbjct: 181 DPDFLKSFAL 190