Miyakogusa Predicted Gene

Lj0g3v0076559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0076559.1 tr|G7KFW5|G7KFW5_MEDTR Pre-mRNA-splicing factor
38B OS=Medicago truncatula GN=MTR_5g077180 PE=4
SV=1,97.96,0,PRP38,Pre-mRNA-splicing factor 38;
UNCHARACTERIZED,Pre-mRNA-splicing factor 38,CUFF.3871.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37370.1 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   281   1e-76
AT5G37370.2 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   268   1e-72
AT5G37370.4 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   187   2e-48
AT5G37370.3 | Symbols: ATSRL1 | PRP38 family protein | chr5:1481...   181   2e-46

>AT5G37370.1 | Symbols: ATSRL1 | PRP38 family protein |
           chr5:14812845-14815988 REVERSE LENGTH=393
          Length = 393

 Score =  281 bits (719), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 130/145 (89%), Positives = 138/145 (95%)

Query: 2   EIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
           EIQ++GR  ESLLEKVL MNILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVADPKTLWSWFEPYIKD 121
           PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAVGFLYLRYVAD KTLW+W+EPYIKD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 DEEFSPGSNGRMTTMGVYIRDLLLG 146
           DEEFSPGSNGRMTTMGVY+RDLLLG
Sbjct: 123 DEEFSPGSNGRMTTMGVYVRDLLLG 147


>AT5G37370.2 | Symbols: ATSRL1 | PRP38 family protein |
           chr5:14812845-14815988 REVERSE LENGTH=385
          Length = 385

 Score =  268 bits (685), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 124/138 (89%), Positives = 131/138 (94%)

Query: 2   EIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
           EIQ++GR  ESLLEKVL MNILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVADPKTLWSWFEPYIKD 121
           PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAVGFLYLRYVAD KTLW+W+EPYIKD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 DEEFSPGSNGRMTTMGVY 139
           DEEFSPGSNGRMTTMGVY
Sbjct: 123 DEEFSPGSNGRMTTMGVY 140


>AT5G37370.4 | Symbols: ATSRL1 | PRP38 family protein |
           chr5:14812845-14815823 REVERSE LENGTH=338
          Length = 338

 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 84/92 (91%), Positives = 89/92 (96%)

Query: 55  MTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVADPKTLWSW 114
           M GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAVGFLYLRYVAD KTLW+W
Sbjct: 1   MGGNCRGPSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTW 60

Query: 115 FEPYIKDDEEFSPGSNGRMTTMGVYIRDLLLG 146
           +EPYIKDDEEFSPGSNGRMTTMGVY+RDLLLG
Sbjct: 61  YEPYIKDDEEFSPGSNGRMTTMGVYVRDLLLG 92


>AT5G37370.3 | Symbols: ATSRL1 | PRP38 family protein |
          chr5:14815239-14815988 REVERSE LENGTH=111
          Length = 111

 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/96 (87%), Positives = 90/96 (93%)

Query: 2  EIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRG 61
          EIQ++GR  ESLLEKVL MNILSSDYFKELY LKTYHEVIDEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTSFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAV 97
          PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAI 98