Miyakogusa Predicted Gene

Lj0g3v0076259.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0076259.1 tr|A9T4G5|A9T4G5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_140119,32.59,6e-18,seg,NULL,CUFF.3846.1
         (248 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25545.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   134   8e-32

>AT3G25545.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 38
           Blast hits to 38 proteins in 14 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:9277637-9278440 FORWARD LENGTH=267
          Length = 267

 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 18/233 (7%)

Query: 1   MEDVITEAAPPSRLLEEDLNXXXXXXXXXXXXXXIFPHHQQQQPLKPTXXXXXXXXXXXX 60
           MEDV+TE  PPSR  +EDLN              IF + + + PL+P+            
Sbjct: 1   MEDVLTENPPPSRFFQEDLNNFVQPPESLPSPFIIFSNPKPELPLRPSLLIIAISSPSLY 60

Query: 61  XXXXXXTPQTLTASLILPE----SNTF--------LDLHSLSPT-----SLLAAVRTPIP 103
                 + +TL  SLI+PE     NT          +++SLS       +LL +V+ P+ 
Sbjct: 61  IFHSLPS-KTLLGSLIMPEVPFSGNTMEPSLEDKSCNIYSLSSADDKNLTLLVSVQLPVS 119

Query: 104 AHRAVAVAKLLLGDKIKPSSVIVLDSLDPRHHRGRLSSDLPIAFKLESSAERAVXXXXXX 163
             R+  V++LL+   I P  VI+LDS+  R+ RGRLS D  +A KLE+SAE+        
Sbjct: 120 PERSNLVSRLLIAKDIIPERVIILDSIQSRNFRGRLSPDETLAAKLETSAEKKATTHTGL 179

Query: 164 XXXXYYPSGSIVEGLAAAILARCQILKLRASLCVSWPQFDASAVLLVKDLLQR 216
               Y+PSGS+++GL+A++L+RCQ+  +R +L +SWP+F  S +     LL++
Sbjct: 180 VNLDYFPSGSVIDGLSASLLSRCQLKNIRGTLVISWPEFGPSVIRFAGALLKK 232