Miyakogusa Predicted Gene
- Lj0g3v0076199.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0076199.1 Non Chatacterized Hit- tr|D5ADJ7|D5ADJ7_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,38.1,1e-16,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
RING/U-box,NULL; no description,Zinc finger, RING/F,CUFF.3839.1
(412 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14180.1 | Symbols: | RING/U-box superfamily protein | chr1:... 229 3e-60
AT1G14180.2 | Symbols: | RING/U-box superfamily protein | chr1:... 191 7e-49
AT5G18260.1 | Symbols: | RING/U-box superfamily protein | chr5:... 89 7e-18
AT4G39140.5 | Symbols: | RING/U-box superfamily protein | chr4:... 75 8e-14
AT4G39140.4 | Symbols: | RING/U-box superfamily protein | chr4:... 75 8e-14
AT4G39140.3 | Symbols: | RING/U-box superfamily protein | chr4:... 75 8e-14
AT4G39140.2 | Symbols: | RING/U-box superfamily protein | chr4:... 75 8e-14
AT4G39140.1 | Symbols: | RING/U-box superfamily protein | chr4:... 75 8e-14
AT1G19680.1 | Symbols: | RING/U-box superfamily protein | chr1:... 61 2e-09
AT2G21500.1 | Symbols: | RING/U-box superfamily protein | chr2:... 60 2e-09
AT2G21500.2 | Symbols: | RING/U-box superfamily protein | chr2:... 60 2e-09
AT1G75400.1 | Symbols: | RING/U-box superfamily protein | chr1:... 60 3e-09
>AT1G14180.1 | Symbols: | RING/U-box superfamily protein |
chr1:4847828-4848970 FORWARD LENGTH=348
Length = 348
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 199/395 (50%), Gaps = 94/395 (23%)
Query: 1 MGPNEPYWRTNTSFSPPPTRWDFRFQSEGLPYSLSDGVQLYDGSPTSSNSKESRAWVRGN 60
G +EPYWRTNTSFSPP +RWD + L DG+ Y GS TSSN+
Sbjct: 23 FGLHEPYWRTNTSFSPPSSRWDV--------HGLMDGISCY-GSSTSSNAN--------- 64
Query: 61 QLYDLQYAASDGTGVFLSSPSDLSQGPQWTPPAIQEISIDDYETLTRKGPHPSGLASFTC 120
L SP DLSQ WTP +D+E+ TR+ L
Sbjct: 65 ---------------VLRSP-DLSQALHWTP--------NDFESATRRDQIVKQLP---- 96
Query: 121 TKEGTSKNPNRGGXXXXXXXXXXXXXTTKSNLSFQRNFSNHRSFISKPIHPLSFPDITTT 180
GTS+N G RN S+ R F+SKP+HP+ P
Sbjct: 97 ---GTSRNVGIGDSEPG------------------RNSSSRRFFLSKPVHPILHPSDNVR 135
Query: 181 RDAFDPAVTTFTEFDTSTPLRDGQRWSSAS-SSQDFADVTESF----ELETPSHPHIPSD 235
A D A D WSS + SS D DV E T + S
Sbjct: 136 DTASDSA--------------DACSWSSGTPSSIDSVDVPEPVLDWNNNSTKAQQVAASS 181
Query: 236 GSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCP 295
+C LC R+LSQ+SPW +R IVR+ DMP G+L C+HVFH ECL+Q+TPK +++DP CP
Sbjct: 182 TFKCGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCP 241
Query: 296 VCVKFEEENSPDQRGTLRLRNGFPRLKPFCEDGP-SRSWGCSQAGDCVAGALHAQPRNAM 354
+C K E E+ + N PRLKP EDGP SR WGC+QAGDCV A++ P+N M
Sbjct: 242 ICTKQEGEH-------FKSNNIVPRLKPLYEDGPSSRPWGCAQAGDCVESAVNVPPKNTM 294
Query: 355 FLLNRNRIKRNLSSKGNLSKEFPGKIRKSGAYSSQ 389
++NRNRI+++LS +GN SK+F K+++S + + +
Sbjct: 295 MMINRNRIRKSLSLRGNSSKDFSRKMKRSNSVAME 329
>AT1G14180.2 | Symbols: | RING/U-box superfamily protein |
chr1:4847976-4848970 FORWARD LENGTH=297
Length = 297
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 142/240 (59%), Gaps = 27/240 (11%)
Query: 156 RNFSNHRSFISKPIHPLSFPDITTTRDAFDPAVTTFTEFDTSTPLRDGQRWSSAS-SSQD 214
RN S+ R F+SKP+HP+ P A D A D WSS + SS D
Sbjct: 60 RNSSSRRFFLSKPVHPILHPSDNVRDTASDSA--------------DACSWSSGTPSSID 105
Query: 215 FADVTESF----ELETPSHPHIPSDGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILP 270
DV E T + S +C LC R+LSQ+SPW +R IVR+ DMP G+L
Sbjct: 106 SVDVPEPVLDWNNNSTKAQQVAASSTFKCGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLS 165
Query: 271 CRHVFHAECLEQTTPKTRKSDPPCPVCVKFEEENSPDQRGTLRLRNGFPRLKPFCEDGP- 329
C+HVFH ECL+Q+TPK +++DP CP+C K E E+ + N PRLKP EDGP
Sbjct: 166 CQHVFHVECLDQSTPKIQRNDPLCPICTKQEGEH-------FKSNNIVPRLKPLYEDGPS 218
Query: 330 SRSWGCSQAGDCVAGALHAQPRNAMFLLNRNRIKRNLSSKGNLSKEFPGKIRKSGAYSSQ 389
SR WGC+QAGDCV A++ P+N M ++NRNRI+++LS +GN SK+F K+++S + + +
Sbjct: 219 SRPWGCAQAGDCVESAVNVPPKNTMMMINRNRIRKSLSLRGNSSKDFSRKMKRSNSVAME 278
>AT5G18260.1 | Symbols: | RING/U-box superfamily protein |
chr5:6036226-6037295 REVERSE LENGTH=320
Length = 320
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 238 RCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVC 297
RC +C++ LSQ+SPWS+ +I+RS DMP G+ PC HV+H ECL++ TP + DP CPVC
Sbjct: 191 RCGICKKLLSQKSPWSSYKILRSRDMPATGVFPCHHVYHVECLDKATPTAQTRDPSCPVC 250
>AT4G39140.5 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 239 CRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCV 298
C C R LS++S WS+++I + ++ + IL C HV+H ECLEQ TP+ K DP CP+C
Sbjct: 260 CGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICT 319
Query: 299 KFEEENSPDQRGTLRL 314
E++ + L++
Sbjct: 320 MGEKKTAKLSEKALKV 335
>AT4G39140.4 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 239 CRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCV 298
C C R LS++S WS+++I + ++ + IL C HV+H ECLEQ TP+ K DP CP+C
Sbjct: 260 CGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICT 319
Query: 299 KFEEENSPDQRGTLRL 314
E++ + L++
Sbjct: 320 MGEKKTAKLSEKALKV 335
>AT4G39140.3 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 239 CRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCV 298
C C R LS++S WS+++I + ++ + IL C HV+H ECLEQ TP+ K DP CP+C
Sbjct: 260 CGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICT 319
Query: 299 KFEEENSPDQRGTLRL 314
E++ + L++
Sbjct: 320 MGEKKTAKLSEKALKV 335
>AT4G39140.2 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 239 CRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCV 298
C C R LS++S WS+++I + ++ + IL C HV+H ECLEQ TP+ K DP CP+C
Sbjct: 260 CGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICT 319
Query: 299 KFEEENSPDQRGTLRL 314
E++ + L++
Sbjct: 320 MGEKKTAKLSEKALKV 335
>AT4G39140.1 | Symbols: | RING/U-box superfamily protein |
chr4:18229637-18231282 REVERSE LENGTH=429
Length = 429
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 239 CRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPCPVCV 298
C C R LS++S WS+++I + ++ + IL C HV+H ECLEQ TP+ K DP CP+C
Sbjct: 260 CGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICT 319
Query: 299 KFEEENSPDQRGTLRL 314
E++ + L++
Sbjct: 320 MGEKKTAKLSEKALKV 335
>AT1G19680.1 | Symbols: | RING/U-box superfamily protein |
chr1:6805909-6807682 FORWARD LENGTH=444
Length = 444
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 235 DGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPC 294
D C C + L++RSP V D+P +L C HV+HA CLE T +T K DP C
Sbjct: 269 DQQTCGRCSKLLTERSP------VARFDLPIPAVLACGHVYHAACLETMTNETEKYDPTC 322
Query: 295 PVCVKFE 301
P+C + +
Sbjct: 323 PICTETQ 329
>AT2G21500.1 | Symbols: | RING/U-box superfamily protein |
chr2:9207965-9209575 REVERSE LENGTH=421
Length = 421
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 234 SDGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPP 293
+D C C R LS++S S+++I + ++ A IL C HV+H+ECLEQ TP+ K DP
Sbjct: 246 NDQQNCGACSRSLSEKSLLSSQKIFATNELSVAAILACGHVYHSECLEQMTPEIDKFDPS 305
Query: 294 CPVCVKFEEE 303
CP+C E++
Sbjct: 306 CPICTLGEKK 315
>AT2G21500.2 | Symbols: | RING/U-box superfamily protein |
chr2:9207965-9209575 REVERSE LENGTH=421
Length = 421
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 234 SDGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPP 293
+D C C R LS++S S+++I + ++ A IL C HV+H+ECLEQ TP+ K DP
Sbjct: 246 NDQQNCGACSRSLSEKSLLSSQKIFATNELSVAAILACGHVYHSECLEQMTPEIDKFDPS 305
Query: 294 CPVCVKFEEE 303
CP+C E++
Sbjct: 306 CPICTLGEKK 315
>AT1G75400.1 | Symbols: | RING/U-box superfamily protein |
chr1:28297609-28299464 FORWARD LENGTH=455
Length = 455
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 235 DGSRCRLCERFLSQRSPWSTRRIVRSGDMPTAGILPCRHVFHAECLEQTTPKTRKSDPPC 294
D C C + L++RS +T ++P A +L C HV+HAECLE T K DP C
Sbjct: 277 DQQVCGACSKLLTERSSIATF------ELPIAAVLACGHVYHAECLETMTTDIEKYDPAC 330
Query: 295 PVCVKFEE 302
P+C E+
Sbjct: 331 PICTIGEK 338