Miyakogusa Predicted Gene

Lj0g3v0075949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0075949.1 Non Chatacterized Hit- tr|J3N3Z3|J3N3Z3_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB10G2,38.51,3e-19,MUTS RELATED,NULL; DNA MISMATCH REPAIR MUTS
RELATED PROTEINS,NULL,CUFF.3840.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54090.1 | Symbols:  | DNA mismatch repair protein MutS, type...   108   1e-24

>AT5G54090.1 | Symbols:  | DNA mismatch repair protein MutS, type 2
           | chr5:21948283-21952550 REVERSE LENGTH=796
          Length = 796

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 105/170 (61%), Gaps = 8/170 (4%)

Query: 1   MEKFKQEYQELLAEGRHYLMHSRELHNSLLNTRRKIAEHSTKLRFKKMREVSEAAATARS 60
           ME++KQEYQ LL E R Y+  SRELH +LL  ++ I +HSTK R K  +E+++A +  RS
Sbjct: 633 MERYKQEYQRLLNESRVYIRLSRELHENLLTAQKNINDHSTKERRKMRQELTQAGSMTRS 692

Query: 61  DIHKKVREMDALAKQASQHKKSIKSSPSSATNSLHTAADNKKPTIADRSASAIKKLNQSS 120
            + + +++  + A ++SQ K +     +     + T  D        RS+S +++     
Sbjct: 693 TLRRTLQQFRSSAGKSSQSKVA-----TQLQTKVKTTKDEDN---GIRSSSVVERRPLPE 744

Query: 121 SDRFELPKVGDMVHVASLGKKVTVLKVDSSKGDIVVQAGNMKLKLKVTDI 170
           +   ++P+VG  V V+SLGKK TVLKV+ SK +I+VQ G MK+K+K+TD+
Sbjct: 745 AAAQKVPEVGSSVFVSSLGKKATVLKVEHSKKEILVQVGIMKMKVKLTDV 794