Miyakogusa Predicted Gene

Lj0g3v0075319.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0075319.1 tr|G2XMP1|G2XMP1_ORYGL Hypothetical_protein
OS=Oryza glaberrima GN=Ogl11g0094H08_1 PE=4 SV=1,36.75,6e-19,seg,NULL;
GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1,NULL; TRANSCRIPTION
INITIATION FACTOR IIE, ALPH,CUFF.3783.1
         (252 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03280.1 | Symbols:  | Transcription factor TFIIE, alpha subu...   185   2e-47
AT4G20340.1 | Symbols:  | Transcription factor TFIIE, alpha subu...   153   1e-37
AT4G20810.1 | Symbols:  | transcription initiation factor IIE (T...   144   4e-35

>AT1G03280.1 | Symbols:  | Transcription factor TFIIE, alpha subunit
           | chr1:803635-806758 FORWARD LENGTH=479
          Length = 479

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/230 (49%), Positives = 142/230 (61%), Gaps = 24/230 (10%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPLMDQL+RVKDLP+PEFGS               NGD+N  D   SQ GY   PMP+ G
Sbjct: 239 KPLMDQLNRVKDLPIPEFGSF-LAWEARAAMAARENGDLNPNDPLRSQGGYGSTPMPFLG 297

Query: 74  DTKVVVDF-NGTE-VKGEGVKSEADTSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDGTS 131
           +TKV V+  +G E VK +G     D+SLKVLPPWMI  GMNLT+EQRGE++QE K+DG  
Sbjct: 298 ETKVEVNLGDGNEDVKSKG----GDSSLKVLPPWMIKEGMNLTEEQRGEMRQEAKVDG-G 352

Query: 132 TSTAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQEEVAKNQQSVDTQAADDPSSS 191
              AA+ +DDKKS+IG+ D K+++DEY+KAYYA L+KQQE  A+  Q    ++A +P+S 
Sbjct: 353 AGAAAKLSDDKKSAIGNGDEKDLKDEYLKAYYAELMKQQELAARRNQQ---ESAGEPTSG 409

Query: 192 T------FGRQVGMKSKX-----XXXXXXXXXXXAPLGGNGNVGYKVDLN 230
                   GRQV MK+K                 AP+  NGN  YKVDLN
Sbjct: 410 IQSGTVYSGRQVSMKAKREEDEDEDEEEVEWEEKAPVTANGN--YKVDLN 457


>AT4G20340.1 | Symbols:  | Transcription factor TFIIE, alpha subunit
           | chr4:10985011-10987748 FORWARD LENGTH=475
          Length = 475

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 134/227 (59%), Gaps = 23/227 (10%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPLM+ ++RVKDLP P F    A            NGD N  D   S  GY   PMP+ G
Sbjct: 239 KPLMELINRVKDLPFPAFEPFPA-WEARAAKAARENGDFNPDDPSRSLGGYGSTPMPFLG 297

Query: 74  DTKVVVDFNGTEVKGEG----VKSEADTSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDG 129
           +TKV V+       GEG      +  D+SLK+LPPWMI  GM LT+EQRGE++QE  +DG
Sbjct: 298 ETKVEVNL------GEGNEDVTSTGGDSSLKMLPPWMIKQGMKLTEEQRGEMRQEANVDG 351

Query: 130 TSTSTAAQYTDDKKSSIGH-DDNKNIQDEYIKAYYAALLKQQEEVAK-NQQSV--DTQAA 185
                AA+ +DDKKS + + DDNK+++DEY+KAYYAA+++QQ+  AK N+Q    ++   
Sbjct: 352 ----EAAKLSDDKKSVMENGDDNKDLKDEYLKAYYAAIMEQQKLAAKLNEQESAGESTTT 407

Query: 186 DDPSSSTFG-RQVGMKSKXXXXXXXXXXXX-APLGGNGNVGYKVDLN 230
           D  S++T+  RQVGMKSK             A +  NGN  YKVDLN
Sbjct: 408 DIESATTYSDRQVGMKSKREEEEEDVEWEEGASVAANGN--YKVDLN 452


>AT4G20810.1 | Symbols:  | transcription initiation factor IIE
           (TFIIE) alpha subunit family protein / general
           transcription factor TFIIE family protein |
           chr4:11141427-11143597 REVERSE LENGTH=416
          Length = 416

 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 126/223 (56%), Gaps = 27/223 (12%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPLMD ++R+KDLPVP F S  AWE          NGD+N  D+   Q GY   PMP+ G
Sbjct: 197 KPLMDHINRIKDLPVPSFESFPAWETRVAKAARE-NGDLNPDDTLRPQGGYGSTPMPFLG 255

Query: 74  DTKVVVDFNGTEVKGEGVKSE--ADTSLKVL-PPWMITSGMNLTKEQRGEVKQEMKMDGT 130
           +T++ V+  G E   E VKS+   D+S + L P W+I  GMNL+ EQRGE++ E K D  
Sbjct: 256 ETEIEVNL-GEE--NEDVKSDEVGDSSRRKLTPSWLIKKGMNLSDEQRGEIRHEAKADDG 312

Query: 131 STSTAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQEEVAK-NQQSVDTQAADDP- 188
            +S               DD++N++DEY+KAYYAA+L++QE   K NQQ    +   D  
Sbjct: 313 GSSME-----------NGDDDRNLKDEYLKAYYAAILEEQELAEKLNQQESAGKVTTDIE 361

Query: 189 -SSSTFGRQVGMKSKXXXXXXXXXXXXAPLGGNGNVGYKVDLN 230
            ++S+  RQVGMKSK            A +  NGN  YKVDLN
Sbjct: 362 LATSSSDRQVGMKSK----REEEEEEEASVAANGN--YKVDLN 398