Miyakogusa Predicted Gene

Lj0g3v0075269.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0075269.1 Non Chatacterized Hit- tr|I1KDQ8|I1KDQ8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,60.87,3e-18,PREDICTED
PROTEIN (FRAGMENT),NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,CUFF.3773.1
         (74 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00810.1 | Symbols: ORF240B | DNA/RNA polymerases superfamily...    50   4e-07
AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like p...    48   2e-06

>ATMG00810.1 | Symbols: ORF240B | DNA/RNA polymerases superfamily
           protein | chrM:227709-228431 REVERSE LENGTH=240
          Length = 240

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 10  DASLFKQFVGSLRYLCNLRSDISYCVGLISKFMSAPKKSHLAVAKRILRYLQGT 63
           D S F+  VG+L+YL   R DISY V ++ + M  P  +   + KR+LRY++GT
Sbjct: 96  DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGT 149


>AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like
           protein kinase) 8 | chr4:12129485-12134086 FORWARD
           LENGTH=1262
          Length = 1262

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 7   GD-VDASLFKQFVGSLRYLCNLRSDISYCVGLISKFMSAPKKSHLAVAKRILRYLQGT 63
           GD VDA  +++ +G L YL   R DIS+ V  +S+F  AP+ +H     +IL Y++GT
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGT 427