Miyakogusa Predicted Gene

Lj0g3v0074229.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0074229.1 tr|Q28Y83|Q28Y83_DROPS GA20924 OS=Drosophila
pseudoobscura pseudoobscura GN=GA20924 PE=4 SV=1,51.9,8e-19,Putative
GTP-ase activating proteins for the,Arf GTPase activating protein;
ArfGap,Arf GTPase activa,CUFF.3725.1
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54310.1 | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057...   244   5e-65
AT3G17660.1 | Symbols: AGD15 | ARF-GAP domain 15 | chr3:6037717-...   121   6e-28
AT5G13300.1 | Symbols: SFC, VAN3, AGD3 | ARF GTPase-activating p...    71   6e-13
AT4G05330.1 | Symbols: AGD13 | ARF-GAP domain 13 | chr4:2720772-...    69   3e-12
AT4G21160.4 | Symbols: ZAC | Calcium-dependent ARF-type GTPase a...    67   1e-11
AT4G21160.2 | Symbols: ZAC | Calcium-dependent ARF-type GTPase a...    67   1e-11
AT4G21160.3 | Symbols: ZAC | Calcium-dependent ARF-type GTPase a...    67   1e-11
AT4G21160.1 | Symbols: ZAC, AGD12 | Calcium-dependent ARF-type G...    67   1e-11
AT5G61980.1 | Symbols: AGD1 | ARF-GAP domain 1 | chr5:24894472-2...    65   4e-11
AT1G60860.1 | Symbols: AGD2 | ARF-GAP domain 2 | chr1:22401244-2...    63   2e-10
AT1G10870.1 | Symbols: AGD4 | ARF-GAP domain 4 | chr1:3616905-36...    62   4e-10
AT3G07940.1 | Symbols:  | Calcium-dependent ARF-type GTPase acti...    57   9e-09
AT5G46750.1 | Symbols: AGD9 | ARF-GAP domain 9 | chr5:18969950-1...    57   1e-08
AT3G53710.2 | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903730-1...    57   2e-08
AT3G53710.1 | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903730-1...    57   2e-08
AT2G37550.2 | Symbols: ASP1, AGD7 | ARF-GAP domain 7 | chr2:1575...    55   4e-08
AT2G37550.1 | Symbols: ASP1, AGD7 | ARF-GAP domain 7 | chr2:1575...    55   4e-08
AT2G35210.1 | Symbols: RPA, AGD10, MEE28 | root and pollen arfga...    55   7e-08
AT2G35210.2 | Symbols: RPA, AGD10, MEE28 | root and pollen arfga...    54   8e-08
AT4G17890.2 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937121-99...    54   8e-08
AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937121-99...    54   9e-08

>AT5G54310.1 | Symbols: NEV, AGD5 | ARF-GAP domain 5 |
           chr5:22057262-22061066 REVERSE LENGTH=483
          Length = 483

 Score =  244 bits (623), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 133/227 (58%), Positives = 159/227 (70%), Gaps = 16/227 (7%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIEN 60
           MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGN+KANSYWEAELPPNYDRVGIEN
Sbjct: 52  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIEN 111

Query: 61  FIRAKYEDKRWVSRDGNSKSPSRLQDEKTQSNWQNPGERGRQSYVTASENAFVERKKIQQ 120
           FIRAKYE+KRWVSR   ++SP R++ E+ +S  +  G      + ++  N F ERK    
Sbjct: 112 FIRAKYEEKRWVSRGEKARSPPRVEQERRKS-VERSGPGYEHGHSSSPVNLFEERK---- 166

Query: 121 SNVIPATRISPSNVIPATRISVPAPPKGPEQVTHVAKPQHIEKVEPAVPQPQAETSQSTG 180
              IPA+R    N + ATRI++P PP+GP QV    KPQ  +K+E A    + E      
Sbjct: 167 --TIPASRT--RNNVAATRINLPVPPQGPSQVI---KPQ--QKMESAATPVEREKQAVNV 217

Query: 181 TAQNSAPKVDYATDLFDMLSMDDPSEKSS--GPADATADDNNWAGFQ 225
              +  PKVD+ATDLF+MLSMDD +  +S   P D  ADDN+WAGFQ
Sbjct: 218 APASDPPKVDFATDLFNMLSMDDSTTNTSEATPGDTPADDNSWAGFQ 264


>AT3G17660.1 | Symbols: AGD15 | ARF-GAP domain 15 |
           chr3:6037717-6039092 FORWARD LENGTH=232
          Length = 232

 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 62/73 (84%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIEN 60
           MQCSGIHRSLGVHIS+VRS TLDTWLP+QVAF++S GN K N YWE+ELP +++R   + 
Sbjct: 52  MQCSGIHRSLGVHISQVRSITLDTWLPDQVAFMKSTGNAKGNEYWESELPQHFERSSSDT 111

Query: 61  FIRAKYEDKRWVS 73
           FIRAKY +KRWVS
Sbjct: 112 FIRAKYSEKRWVS 124


>AT5G13300.1 | Symbols: SFC, VAN3, AGD3 | ARF GTPase-activating
           protein | chr5:4255923-4262018 REVERSE LENGTH=827
          Length = 827

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 28/109 (25%)

Query: 1   MQCSGIHRSLGVHISKVRSATLD--TWLPEQVAFIQSMGNEKANSYWEAEL--------- 49
           ++CSG+HR+LGVHISKVRS TLD   W P  ++  Q++GN  AN+ WE  L         
Sbjct: 537 IECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQALGNTFANTVWEELLHSRSAIHFD 596

Query: 50  ---------------PPNY-DRVGI-ENFIRAKYEDKRWVSRDGNSKSP 81
                           P+Y D + I E +I+AKY +K +V R  +S  P
Sbjct: 597 PGLTVSDKSRVMVTGKPSYADMISIKEKYIQAKYAEKLFVRRSRDSDFP 645


>AT4G05330.1 | Symbols: AGD13 | ARF-GAP domain 13 |
           chr4:2720772-2722679 REVERSE LENGTH=336
          Length = 336

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 15/99 (15%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQV-AFIQSMGNEKANSYWEAELPPNYDRVGIE 59
           ++C G+HRSLG HISKV S TLD W  E+V + I+  GN  ANS +EA LP    + G +
Sbjct: 51  LKCCGVHRSLGTHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPD 110

Query: 60  -------NFIRAKYEDKRWV-------SRDGNSKSPSRL 84
                   FIRAKYE + ++       S  G++KS + L
Sbjct: 111 VNHDQRMRFIRAKYELQEFLKPSLRITSGKGSTKSSAFL 149


>AT4G21160.4 | Symbols: ZAC | Calcium-dependent ARF-type GTPase
           activating protein family | chr4:11284694-11286532
           FORWARD LENGTH=337
          Length = 337

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 25/130 (19%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQV-AFIQSMGNEKANSYWEAELPPNYDRVGIE 59
           ++C G+HRSLG HISKV S TLD W  E+V + I+  GN  ANS +EA +P    + G +
Sbjct: 51  LKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPD 110

Query: 60  -------NFIRAKYEDKRWVS--------RDGNSKSPSRLQDE---------KTQSNWQN 95
                   FIR+KYE + ++         R  ++K+P+ L            +T S+ Q 
Sbjct: 111 ASHDQRMRFIRSKYEHQEFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQ 170

Query: 96  PGERGRQSYV 105
           P   G   ++
Sbjct: 171 PQLEGMVEFI 180


>AT4G21160.2 | Symbols: ZAC | Calcium-dependent ARF-type GTPase
           activating protein family | chr4:11284694-11286532
           FORWARD LENGTH=337
          Length = 337

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 25/130 (19%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQV-AFIQSMGNEKANSYWEAELPPNYDRVGIE 59
           ++C G+HRSLG HISKV S TLD W  E+V + I+  GN  ANS +EA +P    + G +
Sbjct: 51  LKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPD 110

Query: 60  -------NFIRAKYEDKRWVS--------RDGNSKSPSRLQDE---------KTQSNWQN 95
                   FIR+KYE + ++         R  ++K+P+ L            +T S+ Q 
Sbjct: 111 ASHDQRMRFIRSKYEHQEFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQ 170

Query: 96  PGERGRQSYV 105
           P   G   ++
Sbjct: 171 PQLEGMVEFI 180


>AT4G21160.3 | Symbols: ZAC | Calcium-dependent ARF-type GTPase
           activating protein family | chr4:11284694-11286532
           FORWARD LENGTH=337
          Length = 337

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 25/130 (19%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQV-AFIQSMGNEKANSYWEAELPPNYDRVGIE 59
           ++C G+HRSLG HISKV S TLD W  E+V + I+  GN  ANS +EA +P    + G +
Sbjct: 51  LKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPD 110

Query: 60  -------NFIRAKYEDKRWVS--------RDGNSKSPSRLQDE---------KTQSNWQN 95
                   FIR+KYE + ++         R  ++K+P+ L            +T S+ Q 
Sbjct: 111 ASHDQRMRFIRSKYEHQEFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQ 170

Query: 96  PGERGRQSYV 105
           P   G   ++
Sbjct: 171 PQLEGMVEFI 180


>AT4G21160.1 | Symbols: ZAC, AGD12 | Calcium-dependent ARF-type
           GTPase activating protein family |
           chr4:11284694-11286532 FORWARD LENGTH=337
          Length = 337

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 25/130 (19%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQV-AFIQSMGNEKANSYWEAELPPNYDRVGIE 59
           ++C G+HRSLG HISKV S TLD W  E+V + I+  GN  ANS +EA +P    + G +
Sbjct: 51  LKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPD 110

Query: 60  -------NFIRAKYEDKRWVS--------RDGNSKSPSRLQDE---------KTQSNWQN 95
                   FIR+KYE + ++         R  ++K+P+ L            +T S+ Q 
Sbjct: 111 ASHDQRMRFIRSKYEHQEFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQ 170

Query: 96  PGERGRQSYV 105
           P   G   ++
Sbjct: 171 PQLEGMVEFI 180


>AT5G61980.1 | Symbols: AGD1 | ARF-GAP domain 1 |
           chr5:24894472-24899178 FORWARD LENGTH=828
          Length = 828

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 1   MQCSGIHRSLGVHISKVRSATLD--TWLPEQVAFIQSMGNEKANSYWEAEL 49
           ++CSGIHR+LGVHISKVRS TLD   W P  +   QS+GN   NS WE  L
Sbjct: 534 IECSGIHRNLGVHISKVRSLTLDVKVWEPSVLTLFQSLGNVYVNSVWEELL 584


>AT1G60860.1 | Symbols: AGD2 | ARF-GAP domain 2 |
           chr1:22401244-22407639 REVERSE LENGTH=776
          Length = 776

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 26/110 (23%)

Query: 1   MQCSGIHRSLGVHISKVRSATLD--TWLPEQVAFIQSMGNEKANSYWEAEL--------- 49
           ++CSG+HR+LGVHISKVRS TLD   W P  +   +++GN   NS WE  L         
Sbjct: 503 IECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFRNLGNGYCNSVWEELLHHLDDDSEK 562

Query: 50  -----------PPNYDRVGI-ENFIRAKYEDKRWVSRD---GNSKSPSRL 84
                      P + D   + E +I  KY +K  V +D    NS + SR+
Sbjct: 563 GSTDTLASVSKPSSEDWFTLKEKYINGKYLEKALVVKDEREANSTASSRI 612


>AT1G10870.1 | Symbols: AGD4 | ARF-GAP domain 4 |
           chr1:3616905-3623612 REVERSE LENGTH=775
          Length = 775

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 1   MQCSGIHRSLGVHISKVRSATLD--TWLPEQVAFIQSMGNEKANSYWEAELPPNYD 54
           +QCSG+HR+LGVHISKVRS +LD   W P  +   +++GN   NS WE  L  + D
Sbjct: 503 IQCSGVHRNLGVHISKVRSLSLDVKVWEPTILDLFRNLGNVYCNSLWEGLLHLDDD 558


>AT3G07940.1 | Symbols:  | Calcium-dependent ARF-type GTPase
           activating protein family | chr3:2529542-2531368 FORWARD
           LENGTH=385
          Length = 385

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQV-AFIQSMGNEKANSYWEA-----ELPPNYD 54
           ++CSG+HRSLGVHISKV S  LD W  +QV   +   GN   N  +EA        P  D
Sbjct: 83  IKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPD 142

Query: 55  RVGIE--NFIRAKYEDKRWVS-RDG 76
               E  +FIR KYE  +++  +DG
Sbjct: 143 STNEERNDFIRKKYEQHQFMDPKDG 167


>AT5G46750.1 | Symbols: AGD9 | ARF-GAP domain 9 |
          chr5:18969950-18971817 REVERSE LENGTH=402
          Length = 402

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWE 46
          + CS +HRSLGVHIS VRS  LD+W PEQ+  +   GN +A  +++
Sbjct: 46 IDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFK 91


>AT3G53710.2 | Symbols: AGD6 | ARF-GAP domain 6 |
          chr3:19903730-19905419 REVERSE LENGTH=459
          Length = 459

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 33/45 (73%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYW 45
          ++CSG HR LGVHIS VRS T+D+W   Q+  +++ GNE+ N ++
Sbjct: 40 LECSGKHRGLGVHISFVRSVTMDSWSAIQIKKMEAGGNERLNKFF 84


>AT3G53710.1 | Symbols: AGD6 | ARF-GAP domain 6 |
          chr3:19903730-19905419 REVERSE LENGTH=459
          Length = 459

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 33/45 (73%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYW 45
          ++CSG HR LGVHIS VRS T+D+W   Q+  +++ GNE+ N ++
Sbjct: 40 LECSGKHRGLGVHISFVRSVTMDSWSAIQIKKMEAGGNERLNKFF 84


>AT2G37550.2 | Symbols: ASP1, AGD7 | ARF-GAP domain 7 |
          chr2:15755544-15757456 REVERSE LENGTH=456
          Length = 456

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSY 44
          ++CSG HR LGVHIS VRS T+D+W   Q+  + + GNE+ N++
Sbjct: 40 LECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMDAGGNERLNNF 83


>AT2G37550.1 | Symbols: ASP1, AGD7 | ARF-GAP domain 7 |
          chr2:15755544-15757456 REVERSE LENGTH=456
          Length = 456

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSY 44
          ++CSG HR LGVHIS VRS T+D+W   Q+  + + GNE+ N++
Sbjct: 40 LECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMDAGGNERLNNF 83


>AT2G35210.1 | Symbols: RPA, AGD10, MEE28 | root and pollen arfgap
          | chr2:14836206-14837946 FORWARD LENGTH=395
          Length = 395

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWE 46
          + CS +HRSLGVHIS VRS  LD+W  EQ+  +   GN +A  +++
Sbjct: 46 IDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFK 91


>AT2G35210.2 | Symbols: RPA, AGD10, MEE28 | root and pollen arfgap
          | chr2:14836206-14837884 FORWARD LENGTH=371
          Length = 371

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWE 46
          + CS +HRSLGVHIS VRS  LD+W  EQ+  +   GN +A  +++
Sbjct: 46 IDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFK 91


>AT4G17890.2 | Symbols: AGD8 | ARF-GAP domain 8 |
          chr4:9937121-9938988 FORWARD LENGTH=384
          Length = 384

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWE 46
          + CS  HR+LGVHIS VRS  LD+W PEQ+  +   GN +A  +++
Sbjct: 49 IDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFK 94


>AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 |
          chr4:9937121-9939146 FORWARD LENGTH=413
          Length = 413

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 1  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWE 46
          + CS  HR+LGVHIS VRS  LD+W PEQ+  +   GN +A  +++
Sbjct: 49 IDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFK 94