Miyakogusa Predicted Gene

Lj0g3v0073949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0073949.1 Non Chatacterized Hit- tr|E1ZJ68|E1ZJ68_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,39.46,2e-19,Anticodon-binding domain,Anticodon-binding
domain; AD,Anticodon-binding domain; UNCHARACTERIZED,NULL,CUFF.3699.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24050.1 | Symbols:  | RNA-processing, Lsm domain | chr1:8507...   197   2e-51
AT1G70220.1 | Symbols:  | RNA-processing, Lsm domain | chr1:2644...   114   5e-26

>AT1G24050.1 | Symbols:  | RNA-processing, Lsm domain |
           chr1:8507057-8508439 FORWARD LENGTH=188
          Length = 188

 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/172 (56%), Positives = 129/172 (75%), Gaps = 2/172 (1%)

Query: 9   EELAIGCILSIRTTLGDEFEGQVVTFDRPSNILILQQGSKHGPH--RNFRLLKANYIKDF 66
           E+ A+G I S++   GDEF G V+ +D   N +  ++G+K  P   +N R++ A++I   
Sbjct: 17  EKFAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFEEGTKPRPGHLKNTRMVNASFITGL 76

Query: 67  TFLGQAEDPLDPTNCFLDLTALQAREVVAIRQAEADAERIGVGVTSEAQSIFDALSKTLP 126
           ++LG+ EDPLD  N  +DL  L+A+E +AIRQAEADAER+GVGVT+EAQSIFDALSKTLP
Sbjct: 77  SYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEAQSIFDALSKTLP 136

Query: 127 VRWDKTVIVVMNEVRVGSPYNSDSVIGGTPAANDRVKKVLEFERKRLQLRGS 178
           V+W+ + I+VM EVRV SPY SD V GGT AAN+RVKKVLE ER+RLQL G+
Sbjct: 137 VQWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQLFGT 188


>AT1G70220.1 | Symbols:  | RNA-processing, Lsm domain |
           chr1:26446330-26448009 REVERSE LENGTH=224
          Length = 224

 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 47/209 (22%)

Query: 9   EELAIGCILSIRTTLGDEFEGQVVTFDRPSN----------------------------- 39
           E+  +G + +++ T GD+F G V+ +D   N                             
Sbjct: 18  EKFEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCYFAFLISS 77

Query: 40  -----------ILILQQGSKHGP--HRNFRLLKANYIKDFTFLGQAEDPLDPTNCFLDLT 86
                      ++ILQ+G+K  P   ++ R++  NYI +   LG+ ++ L   N  ++L 
Sbjct: 78  SCVCFRVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AKNTLVNLD 136

Query: 87  ALQAREVVAIRQAEADAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVGSPY 146
            L  +E  AI    ++ E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +V + SPY
Sbjct: 137 GLIEKENHAI----SNVEKIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGDVFIRSPY 192

Query: 147 NSDSVIGGTPAANDRVKKVLEFERKRLQL 175
           +SD V GG    N+RVK VL  ERK+LQL
Sbjct: 193 HSDCVYGGPRMVNERVKHVLGQERKKLQL 221