Miyakogusa Predicted Gene

Lj0g3v0073229.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0073229.1 Non Chatacterized Hit- tr|B8AZJ8|B8AZJ8_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,35.29,0.000000003,ZF_RING_2,Zinc finger, RING-type;
ZF_RING_1,Zinc finger, RING-type, conserved site;
RING/U-box,NULL;,CUFF.3642.1
         (461 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44280.1 | Symbols: ATRING1A, RING1A | RING 1A | chr5:1783611...   301   5e-82
AT1G03770.1 | Symbols: ATRING1B, RING1B | RING 1B | chr1:944772-...   270   1e-72
AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944772-947431 FOR...   264   1e-70
AT1G03770.3 | Symbols: RING1B | RING 1B | chr1:944772-947431 FOR...   263   1e-70
AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A | chr5:1783611...   233   2e-61
AT1G28327.1 | Symbols:  | unknown protein; Has 52 Blast hits to ...    59   6e-09
AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer susceptibi...    51   2e-06

>AT5G44280.1 | Symbols: ATRING1A, RING1A | RING 1A |
           chr5:17836115-17839114 REVERSE LENGTH=522
          Length = 522

 Score =  301 bits (772), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 180/411 (43%), Positives = 235/411 (57%), Gaps = 24/411 (5%)

Query: 67  EKSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRT 126
           ++SE++ + L EIRKDVQCPICLGIIKKTRTVMEC+HRFCRECIDKSMRLGNNECPACR 
Sbjct: 118 DQSEFMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRK 177

Query: 127 HCASRRSLRDDPNFDALIAALYPDIKKYXXXXXXXXXXDKNRNKLIQASIAKVVQRQSEA 186
           HCASRRSLRDDP FDALIAAL+ +I  Y          +  RNK IQASIA++ QRQSEA
Sbjct: 178 HCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQISQRQSEA 237

Query: 187 LVKRRR-DTPGAFMTRSQR-------NQRNVISRRQNPEVDTQGSXXXXXXXXXXXKDSS 238
           LVKRR      A + RS R        + +    +QN     +             KDSS
Sbjct: 238 LVKRRSLGKEAAVLMRSPRIASGSRRRRNSRNMEQQNASEAHEDDDNDDNNNRGRDKDSS 297

Query: 239 ADERCTEXXXXXXXXXXXXXXXXXXXXTAS--PDGGCIESEIGISRENQGVSSRQASKPQ 296
           +DER TE                    + +   +G C +++  + R+ +G+S      P+
Sbjct: 298 SDERGTEVRQKKRRKRSTSRSTQHPSSSGANKNNGNCADNDTEVYRDTKGISPGLVWNPE 357

Query: 297 KLTWGRGGFRSNTX-XXXXXXXXXXXXXXXXLAKLVDYL-CNLDENTDEFDIHLMLFPLD 354
            L WGRGG RSNT                  + KLV+YL  ++D ++ E DIH+ L  LD
Sbjct: 358 ILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSVELDIHVKLVSLD 417

Query: 355 RQSTPSLQQPHLVCRPTLSVRHLCEYVACQTPLPVEEVEILAVKRCCSTFCDKSVDEASS 414
            +  P L QP+L CRPTL V+ L E+VA Q  L  EEVE+L  +R         V E ++
Sbjct: 418 TKCIPDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVTRR--------RVGEDAA 469

Query: 415 FDEL---TPLVIDPSKDELETLQGHEPLTGIKSNCI-SQRGHLMLAYRRKE 461
            + L   TP     SKDE+ +L+ +E L+ +K + I S   HL++AYR+K+
Sbjct: 470 IENLPAVTPASAAASKDEMLSLEDNETLSRLKIDFISSHEQHLIIAYRKKQ 520


>AT1G03770.1 | Symbols: ATRING1B, RING1B | RING 1B |
           chr1:944772-947431 FORWARD LENGTH=460
          Length = 460

 Score =  270 bits (691), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 217/397 (54%), Gaps = 27/397 (6%)

Query: 68  KSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTH 127
           +SEY++V L +I KDVQC ICLGII+KTRTVMEC+HRFCRECIDKSMRLGNNECP CR H
Sbjct: 86  ESEYMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKH 145

Query: 128 CASRRSLRDDPNFDALIAALYPDIKKYXXXXXXXXXXDKNRNKLIQASIAKVVQRQSEAL 187
           CASRRSLRDDPNFDALIAAL+ +I K+          D+ RNK IQASIA+V QRQS+AL
Sbjct: 146 CASRRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKAL 205

Query: 188 VKRRRDTPGAFMTRSQRNQRNVISRR---QNPEVDTQGSXXXXXXXXXXXKDSSADERCT 244
           VKR+    G  +    R       RR   +N E DT              KDSS+DE C 
Sbjct: 206 VKRKSVGKGTAILSRSRRSGGGSRRRRNCRNIEQDT-SEANDDDDQNKRGKDSSSDEPCE 264

Query: 245 EXXXXXXXXXXXXXXXXXXXXTASPDGGCIESEIGISRENQGVSSRQASKPQKLTWGRGG 304
                                 A        +E    R+++ +S       + + WGRGG
Sbjct: 265 RQRKKRSATQPSSSNANNNDNCAGN-----GTEQTHQRDSRVISPVLVWNSELIAWGRGG 319

Query: 305 FRSNTXXXXXXXXXXXXXXXXXLAKLVDYLCNLDENTDEFDIHLMLFPLDRQSTPSLQQP 364
            RSNT                 L +LV+YL +L+ N+ E DIHL L  LD +   +L +P
Sbjct: 320 TRSNT-RQGNNNQGAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLLNLHEP 378

Query: 365 HLVCRPTLSVRHLCEYVACQTPLPVEEVEILAVKRCCSTFCDKSVDEASSFDELTPLVID 424
           +L  RPTL V+ L EYVA    L  EEVE+L  K   +   +K+                
Sbjct: 379 YLCFRPTLLVKQLREYVARHLKLKAEEVELLVSKDGDTVIGNKT---------------- 422

Query: 425 PSKDELETLQGHEPLTGIKSNCISQRGHLMLAYRRKE 461
            S +++++LQ  E +  +K +CIS  G++++ YRRK+
Sbjct: 423 -STEKMQSLQDDETVAKLKVDCISSNGYMIVVYRRKQ 458


>AT1G03770.2 | Symbols: RING1B | RING 1B | chr1:944772-947431
           FORWARD LENGTH=468
          Length = 468

 Score =  264 bits (674), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/403 (41%), Positives = 217/403 (53%), Gaps = 33/403 (8%)

Query: 68  KSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTH 127
           +SEY++V L +I KDVQC ICLGII+KTRTVMEC+HRFCRECIDKSMRLGNNECP CR H
Sbjct: 88  ESEYMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKH 147

Query: 128 CASRRSLRDDPNFDALIAALYPDIKKYXXXXXXXXXXDKNRNKLIQASIAKVVQRQSEAL 187
           CASRRSLRDDPNFDALIAAL+ +I K+          D+ RNK IQASIA+V QRQS+AL
Sbjct: 148 CASRRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKAL 207

Query: 188 VKRRRDTPGAFMTRSQRNQRNVISRR---QNPEVDTQGSXXXXXXXXXXXKDSSADERCT 244
           VKR+    G  +    R       RR   +N E DT              KDSS+DE C 
Sbjct: 208 VKRKSVGKGTAILSRSRRSGGGSRRRRNCRNIEQDT-SEANDDDDQNKRGKDSSSDEPCE 266

Query: 245 EXXXXXXXXXXXXXXXXXXXXTASPDGGCIESEIGISRENQGVSSRQASKPQKLTWGRGG 304
                                 A        +E    R+++ +S       + + WGRGG
Sbjct: 267 RQRKKRSATQPSSSNANNNDNCAGN-----GTEQTHQRDSRVISPVLVWNSELIAWGRGG 321

Query: 305 FRSNTXXXXXXXXXXXXXXXXXLAKLVDYLCNLDENTDEFDIHLMLFPLDRQSTPSLQQP 364
            RSNT                 L +LV+YL +L+ N+ E DIHL L  LD +   +L +P
Sbjct: 322 TRSNT-RQGNNNQGAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLLNLHEP 380

Query: 365 HLVCRPTLSVRHLCE------YVACQTPLPVEEVEILAVKRCCSTFCDKSVDEASSFDEL 418
           +L  RPTL V+ L E      YVA    L  EEVE+L  K   +   +K+          
Sbjct: 381 YLCFRPTLLVKQLREVSSLPLYVARHLKLKAEEVELLVSKDGDTVIGNKT---------- 430

Query: 419 TPLVIDPSKDELETLQGHEPLTGIKSNCISQRGHLMLAYRRKE 461
                  S +++++LQ  E +  +K +CIS  G++++ YRRK+
Sbjct: 431 -------STEKMQSLQDDETVAKLKVDCISSNGYMIVVYRRKQ 466


>AT1G03770.3 | Symbols: RING1B | RING 1B | chr1:944772-947431
           FORWARD LENGTH=466
          Length = 466

 Score =  263 bits (673), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/403 (41%), Positives = 217/403 (53%), Gaps = 33/403 (8%)

Query: 68  KSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTH 127
           +SEY++V L +I KDVQC ICLGII+KTRTVMEC+HRFCRECIDKSMRLGNNECP CR H
Sbjct: 86  ESEYMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKH 145

Query: 128 CASRRSLRDDPNFDALIAALYPDIKKYXXXXXXXXXXDKNRNKLIQASIAKVVQRQSEAL 187
           CASRRSLRDDPNFDALIAAL+ +I K+          D+ RNK IQASIA+V QRQS+AL
Sbjct: 146 CASRRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKAL 205

Query: 188 VKRRRDTPGAFMTRSQRNQRNVISRR---QNPEVDTQGSXXXXXXXXXXXKDSSADERCT 244
           VKR+    G  +    R       RR   +N E DT              KDSS+DE C 
Sbjct: 206 VKRKSVGKGTAILSRSRRSGGGSRRRRNCRNIEQDT-SEANDDDDQNKRGKDSSSDEPCE 264

Query: 245 EXXXXXXXXXXXXXXXXXXXXTASPDGGCIESEIGISRENQGVSSRQASKPQKLTWGRGG 304
                                 A        +E    R+++ +S       + + WGRGG
Sbjct: 265 RQRKKRSATQPSSSNANNNDNCAGN-----GTEQTHQRDSRVISPVLVWNSELIAWGRGG 319

Query: 305 FRSNTXXXXXXXXXXXXXXXXXLAKLVDYLCNLDENTDEFDIHLMLFPLDRQSTPSLQQP 364
            RSNT                 L +LV+YL +L+ N+ E DIHL L  LD +   +L +P
Sbjct: 320 TRSNT-RQGNNNQGAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLLNLHEP 378

Query: 365 HLVCRPTLSVRHLCE------YVACQTPLPVEEVEILAVKRCCSTFCDKSVDEASSFDEL 418
           +L  RPTL V+ L E      YVA    L  EEVE+L  K   +   +K+          
Sbjct: 379 YLCFRPTLLVKQLREVSSLPLYVARHLKLKAEEVELLVSKDGDTVIGNKT---------- 428

Query: 419 TPLVIDPSKDELETLQGHEPLTGIKSNCISQRGHLMLAYRRKE 461
                  S +++++LQ  E +  +K +CIS  G++++ YRRK+
Sbjct: 429 -------STEKMQSLQDDETVAKLKVDCISSNGYMIVVYRRKQ 464


>AT5G44280.2 | Symbols: ATRING1A, RING1A | RING 1A |
           chr5:17836115-17839114 REVERSE LENGTH=525
          Length = 525

 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/415 (37%), Positives = 217/415 (52%), Gaps = 29/415 (6%)

Query: 67  EKSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKS----MRLGNNECP 122
           ++SE++ + L EIRKDVQCPICL  +K  R  +   ++  ++C   S        NNECP
Sbjct: 118 DQSEFMEIDLGEIRKDVQCPICLVGMKFLRLFI-SYYKENKDCDGMSPQFCATFKNNECP 176

Query: 123 ACRTHCASRRSLRDDPNFDALIAALYPDIKKYXXXXXXXXXXDKNRNKLIQASIAKVVQR 182
           ACR HCASRRSLRDDP FDALIAAL+ +I  Y          +  RNK IQASIA++ QR
Sbjct: 177 ACRKHCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQISQR 236

Query: 183 QSEALVKRRR-DTPGAFMTRSQR-------NQRNVISRRQNPEVDTQGSXXXXXXXXXXX 234
           QSEALVKRR      A + RS R        + +    +QN     +             
Sbjct: 237 QSEALVKRRSLGKEAAVLMRSPRIASGSRRRRNSRNMEQQNASEAHEDDDNDDNNNRGRD 296

Query: 235 KDSSADERCTEXXXXXXXXXXXXXXXXXXXXTAS--PDGGCIESEIGISRENQGVSSRQA 292
           KDSS+DER TE                    + +   +G C +++  + R+ +G+S    
Sbjct: 297 KDSSSDERGTEVRQKKRRKRSTSRSTQHPSSSGANKNNGNCADNDTEVYRDTKGISPGLV 356

Query: 293 SKPQKLTWGRGGFRSNTX-XXXXXXXXXXXXXXXXLAKLVDYL-CNLDENTDEFDIHLML 350
             P+ L WGRGG RSNT                  + KLV+YL  ++D ++ E DIH+ L
Sbjct: 357 WNPEILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSVELDIHVKL 416

Query: 351 FPLDRQSTPSLQQPHLVCRPTLSVRHLCEYVACQTPLPVEEVEILAVKRCCSTFCDKSVD 410
             LD +  P L QP+L CRPTL V+ L E+VA Q  L  EEVE+L  +R         V 
Sbjct: 417 VSLDTKCIPDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVTRR--------RVG 468

Query: 411 EASSFDEL---TPLVIDPSKDELETLQGHEPLTGIKSNCI-SQRGHLMLAYRRKE 461
           E ++ + L   TP     SKDE+ +L+ +E L+ +K + I S   HL++AYR+K+
Sbjct: 469 EDAAIENLPAVTPASAAASKDEMLSLEDNETLSRLKIDFISSHEQHLIIAYRKKQ 523


>AT1G28327.1 | Symbols:  | unknown protein; Has 52 Blast hits to 52
           proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:9932120-9933195 FORWARD LENGTH=274
          Length = 274

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 18/119 (15%)

Query: 342 DEFDIHLMLFPLDRQSTPSLQQPHLVCRPTLSVRHLCE-YVACQTPLPVEEVEILAVKRC 400
           DE DI ++L  +D    P+LQ P + C+P ++++ LCE YVA       E++E+  VK  
Sbjct: 171 DEMDIQVLLVSMDASVIPNLQNPQVSCKPNVTLKSLCEMYVAPYVEAQAEKIEMYVVKEL 230

Query: 401 CSTFCDKSVDEASSFDELTPLVIDPSKDELETLQGHEPLTGIKSNCISQRGHLMLAYRR 459
            +              ELT  +IDP +D +E +   + + G++    +  G++++ Y +
Sbjct: 231 VA--------------ELT--MIDPHRDRVEIVNKEDSVGGLRMYNFNN-GYVIIGYMK 272


>AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer
           susceptibility1 | chr4:11248174-11252633 FORWARD
           LENGTH=941
          Length = 941

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)

Query: 76  LQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 135
           L+ + ++++CPICL +   +   + C H FC  CI KSM++ +  CP C+     RR +R
Sbjct: 7   LERMGRELKCPICLSLYN-SAVSLSCNHVFCNACIVKSMKM-DATCPVCKIP-YHRREIR 63

Query: 136 DDPNFDALIAALYPDI 151
             P+ D+L+ ++Y ++
Sbjct: 64  GAPHMDSLV-SIYKNM 78