Miyakogusa Predicted Gene

Lj0g3v0073129.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0073129.3 Non Chatacterized Hit- tr|B8BA98|B8BA98_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,41.46,2e-18,9-CIS-EPOXYCAROTENOID DIOXYGENASE,NULL;
BETA-CAROTENE DIOXYGENASE,Carotenoid oxygenase;
RPE65,Carote,CUFF.3638.3
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid...    48   4e-06
AT4G19170.1 | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid di...    47   7e-06

>AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid
           cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD
           LENGTH=538
          Length = 538

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 70  SNTSVFEHSGKFYSAAEIHIPQEIDIFT---LKTLNNWDVNGAWDRPFTSHPKKAPGTGE 126
           +NT++  H GK  +  E   P  I +     L+TL   D +      FT+HPK  P TGE
Sbjct: 172 ANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGE 231

Query: 127 LVTLGVAPAKPFVVVGIFSADG 148
           + T G +   P++   + S DG
Sbjct: 232 MFTFGYSHTPPYLTYRVISKDG 253


>AT4G19170.1 | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid
           dioxygenase 4 | chr4:10481835-10483622 FORWARD
           LENGTH=595
          Length = 595

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 1   MLHALYFKKSSHGNWTVLYNNKQVETETYKLEKQRNKPSLLPATEGDSPAILLSYLLNLL 60
           MLHA+   K  +G  T+   ++ V+T  Y +EKQ   P ++P        +  S     L
Sbjct: 165 MLHAI---KIHNGKATLC--SRYVKTYKYNVEKQTGAP-VMPNVFSGFNGVTASVARGAL 218

Query: 61  RFGKA--NKY-------LSNTSVFEHSGKFYSAAEIHIPQEIDIFT---LKTLNNWDVNG 108
              +    +Y       L+NTS+   S + ++  E  +P  + +     ++T+  +D +G
Sbjct: 219 TAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDG 278

Query: 109 AWDRPFTSHPKKAPGTGELVTLGVAPAKPFVVVGIFSADGNK 150
                 T+HPK  P TGE       P  PF+    F + G K
Sbjct: 279 KLAMSMTAHPKTDPITGETFAFRYGPVPPFLTYFRFDSAGKK 320