Miyakogusa Predicted Gene

Lj0g3v0073129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0073129.1 Non Chatacterized Hit- tr|D8T650|D8T650_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,41.88,2e-17,9-CIS-EPOXYCAROTENOID DIOXYGENASE,NULL;
BETA-CAROTENE DIOXYGENASE,Carotenoid oxygenase;
RPE65,Carote,CUFF.3638.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid...    65   2e-11
AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoid...    51   2e-07

>AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid
           cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD
           LENGTH=538
          Length = 538

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 12/121 (9%)

Query: 1   MPRYG-NANSIKWFEVESNCTFHIINSFEDGHEVVVRGCRA----LDTIIPGPGPNSKEY 55
           +PRY  +   I+WFE+ +   FH  N++E+  EVV+  CR     LD +    G   ++ 
Sbjct: 314 LPRYAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMV---SGKVKEKL 370

Query: 56  EWF-SRCYEWRLNMQTGEVKEEDLCGTETVYMDFPMINEKFIGIKNKYAYTQVVDHAAST 114
           E F +  YE R NM+TG   ++ L  +    +DFP INE + G K +Y Y  ++D  A  
Sbjct: 371 ENFGNELYEMRFNMKTGSASQKKLSASA---VDFPRINECYTGKKQRYVYGTILDSIAKV 427

Query: 115 T 115
           T
Sbjct: 428 T 428


>AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoid
           dioxygenase 9 | chr1:29490895-29492868 REVERSE
           LENGTH=657
          Length = 657

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 17/126 (13%)

Query: 6   NANSIKWFEVESNCTFHIINSFEDGH--EVVVRGC--RALDTIIPGPGPNSKEYEWFSRC 61
           +A+SI+W EV     FH+ NS+E+    EVVV G      D+I      N  +    S  
Sbjct: 455 DASSIQWIEVPDCFCFHLWNSWEEPETDEVVVIGSCMTPPDSIF-----NEHDETLQSVL 509

Query: 62  YEWRLNMQTGEVKEEDLCGTETVYMDFPMINEKFIGIKNKYAYTQVVDHAASTTRDRPKY 121
            E RLN++TGE     +  +E V ++  M+N   +G K +YAY  +       T   PK 
Sbjct: 510 SEIRLNLKTGESTRRPVI-SEQVNLEAGMVNRNLLGRKTRYAYLAL-------TEPWPKV 561

Query: 122 GGLAKL 127
            G AK+
Sbjct: 562 SGFAKV 567